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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_033003
Query referenceOH1004
LocationChr07:33168273-33172479 (+)
DescriptionSimilar to LIG1: DNA ligase 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_033003 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08130 Essential protein.
DNA ligase 1 deficient plants display severe growth defects and delayed repair of both DNA single and double strand breaks.2009 · DOI: 10.1186/1471-2229-9-79
DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana.2010 · DOI: 10.1242/dev.041020

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000012single strand break repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006260DNA replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006273lagging strand elongationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006284base-excision repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=IDA:BHF-UCLUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006287base-excision repair, gap-fillingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006298mismatch repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006302double-strand break repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006303double-strand break repair via nonhomologous end joiningBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.943; coverage=76.351; evalue=0.0; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006310DNA recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009653anatomical structure morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=TAS:ProtIncUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032201telomere maintenance via semi-conservative replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042542response to hydrogen peroxideBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.943; coverage=76.351; evalue=0.0; UniProt GO evidence=IMP:MGIUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071897DNA biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903461Okazaki fragment processing involved in mitotic DNA replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=IDA:HPAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003909DNA ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003910DNA ligase (ATP) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G08130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.33; coverage=95.918; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGddi:DDB_G0274493KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=50.233; coverage=77.431; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:3978KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=50.313; coverage=76.831; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmmu:16881KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=50.943; coverage=76.351; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:397978KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.247; coverage=89.556; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release