Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_032299 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:20069290-20070805 (+) |
| Description | Similar to EMB2750: Pentatricopeptide repeat-containing protein At3g06430%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_032299 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g06430 |
Pentatricopeptide repeat-containing protein At3g06430, chloroplastic. | No verified direct reference in this release |
At3g53170 |
Pentatricopeptide repeat-containing protein At3g53170. | No verified direct reference in this release |
At5g48730 |
Pentatricopeptide repeat-containing protein At5g48730, chloroplastic. | No verified direct reference in this release |
At4g39620 |
Essential for embryo development. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000373 | Group II intron splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.679; coverage=70.293; evalue=3.87e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.679; coverage=70.293; evalue=3.87e-42; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006417 | regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.679; coverage=70.293; evalue=3.87e-42; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009555 | pollen development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031425 | chloroplast RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.679; coverage=70.293; evalue=3.87e-42; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048868 | pollen tube development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.651; coverage=83.891; evalue=7.94e-111; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.651; coverage=83.891; evalue=7.94e-111; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003727 | single-stranded RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.679; coverage=70.293; evalue=3.87e-42; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019843 | rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G06430 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.195; coverage=92.469; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G53170 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.651; coverage=83.891; evalue=7.94e-111 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G48730 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.325; coverage=83.054; evalue=2.75e-108 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100126361 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.679; coverage=70.293; evalue=3.87e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release |