Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_029009`
Query reference	OH1004
Location	Chr06:77648229-77653879 (-)
Description	Similar to PCMP-A1: Pentatricopeptide repeat-containing protein At1g31790 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_029009 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 9 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31790`	Pentatricopeptide repeat-containing protein At1g31790.	No verified direct reference in this release
`At3g24000`	Pentatricopeptide repeat-containing protein At3g24000, mitochondrial.	No verified direct reference in this release
`At4g18520`	Required for proper chloroplast development.	Seedling Lethal1, a pentatricopeptide repeat protein lacking an E/E+ or DYW domain in Arabidopsis, is involved in plastid gene expression and early chloroplast development.2013 · DOI: 10.1104/pp.113.227199 PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana.2015 · DOI: 10.1007/s11120-015-0171-4
`At1g68930`	Putative pentatricopeptide repeat-containing protein At1g68930.	No verified direct reference in this release
`At4g37170`	Pentatricopeptide repeat-containing protein At4g37170.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.113; coverage=52.069; evalue=3.49e-40; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008380	RNA splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.113; coverage=52.069; evalue=3.49e-40; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009451	RNA modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.136; coverage=58.103; evalue=2.55e-83; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900865	chloroplast RNA modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.113; coverage=52.069; evalue=3.49e-40; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.653; coverage=60.172; evalue=5.36e-42; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.136; coverage=58.103; evalue=2.55e-83; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.136; coverage=58.103; evalue=2.55e-83; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.113; coverage=52.069; evalue=3.49e-40; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.653; coverage=60.172; evalue=5.36e-42; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G31790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.136; coverage=58.103; evalue=2.55e-83	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G24000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.653; coverage=60.172; evalue=5.36e-42	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18520	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.113; coverage=52.069; evalue=3.49e-40	UniProtKB/Swiss-Prot DAT 2026 current_release