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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_022697
Query referenceOH1004
LocationChr05:5220461-5224007 (-)
DescriptionSimilar to URT1: UTP:RNA uridylyltransferase 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022697 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g45620 UTP:RNA uridylyltransferase with a marked preference for uridine polymerization and a distributive activity for the first added nucleotides.
Uridylation prevents 3' trimming of oligoadenylated mRNAs.2013 · DOI: 10.1093/nar/gkt465
Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005091
Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005119
Uridylation and PABP Cooperate to Repair mRNA Deadenylated Ends in Arabidopsis.2016 · DOI: 10.1016/j.celrep.2016.02.060
A genetics screen highlights emerging roles for CPL3, RST1 and URT1 in RNA metabolism and silencing.2019 · DOI: 10.1038/s41477-019-0419-7
The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis.2021 · DOI: 10.1038/s41467-021-21382-2

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000289nuclear-transcribed mRNA poly(A) tail shorteningBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010586miRNA metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010587miRNA catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010605negative regulation of macromolecule metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031054pre-miRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031123RNA 3'-end processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:00709353'-UTR-mediated mRNA stabilizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.5; coverage=44.321; evalue=4.71e-51; UniProt GO evidence=IMP:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141008transposable element silencing by mRNA destabilizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900369negative regulation of post-transcriptional gene silencing by regulatory ncRNABiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990074polyuridylation-dependent mRNA catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000932P-bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.5; coverage=44.321; evalue=4.71e-51; UniProt GO evidence=IDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=HDA:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003730mRNA 3'-UTR bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.5; coverage=44.321; evalue=4.71e-51; UniProt GO evidence=NAS:PomBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016779nucleotidyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035198miRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050265RNA uridylyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070569uridylyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990817poly(A) RNA polymerase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G45620KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.767; coverage=108.31; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGhsa:79670KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.906; coverage=44.044; evalue=6.76e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2539762KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.556; coverage=43.629; evalue=3.77e-54UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGspo:2543204KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.5; coverage=44.321; evalue=4.71e-51UniProtKB/Swiss-Prot DAT 2026 current_release