Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_006972`
Query reference	OH1004
Location	Chr02:32633154-32634586 (-)
Description	Similar to PTST: Protein PTST%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_006972 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39790`	Involved in targeting GBSS1 to the starch granule.	Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein.2008 · DOI: 10.1186/1471-2229-8-120
`At5g03420`	Involved in starch granule initiation in leaf chloroplasts.	No verified direct reference in this release
`At1g27070`	Involved in starch granule initiation in leaf chloroplasts.	Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves.2017 · DOI: 10.1105/tpc.17.00222 Two Plastidial Coiled-Coil Proteins Are Essential for Normal Starch Granule Initiation in Arabidopsis.2018 · DOI: 10.1105/tpc.18.00219

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0686900`	Involved in compound starch granule formation and starch synthesis in endosperm.	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm.2014 · DOI: 10.1111/tpj.12444

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006633	fatty acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.769; coverage=31.271; evalue=3.78e-06; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010581	regulation of starch biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019252	starch biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000014	regulation of endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.273; coverage=37.801; evalue=1.05e-12; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.769; coverage=31.271; evalue=3.78e-06; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009535	chloroplast thylakoid membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.154; coverage=26.804; evalue=1.08e-12; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009569	chloroplast starch grain	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030247	polysaccharide binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001066	amylopectin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.273; coverage=37.801; evalue=1.05e-12; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001070	starch binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001071	maltoheptaose binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.154; coverage=26.804; evalue=1.08e-12; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G27070	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=46.154; coverage=26.804; evalue=1.08e-12	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G03420	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.837; coverage=42.268; evalue=2.5e-14	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G39790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.5; coverage=68.729; evalue=3.93e-89	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0686900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.273; coverage=37.801; evalue=1.05e-12	UniProtKB/Swiss-Prot DAT 2026 current_release