Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_006624`
Query reference	OH1004
Location	Chr02:20172422-20176493 (+)
Description	Similar to CRWN4: Protein CROWDED NUCLEI 4 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_006624 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65770`	Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity).	LITTLE NUCLEI 1 and 4 regulate nuclear morphology in Arabidopsis thaliana.2013 · DOI: 10.1093/pcp/pct031 Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization.2013 · DOI: 10.1186/1471-2229-13-200
`At1g67230`	Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity).	LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.053231 LITTLE NUCLEI 1 and 4 regulate nuclear morphology in Arabidopsis thaliana.2013 · DOI: 10.1093/pcp/pct031 Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization.2013 · DOI: 10.1186/1471-2229-13-200 The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis.2014 · DOI: 10.1105/tpc.113.122168

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0767000`	Architectural component of nuclear structure that plays different roles in controlling nuclear size and morphology (Probable).	A lamin-like protein OsNMCP1 regulates drought resistance and root growth through chromatin accessibility modulation by interacting with a chromatin remodeller OsSWI3C in rice.2020 · DOI: 10.1111/nph.16518

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006974	DNA damage response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006997	nucleus organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043578	nuclear matrix organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.306; coverage=83.527; evalue=7.15e-77; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0097298	regulation of nucleus size	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902584	positive regulation of response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.205; coverage=90.603; evalue=5.1e-160; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000280	regulation of root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.205; coverage=90.603; evalue=5.1e-160; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.044; coverage=94.664; evalue=1.4e-68; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005576	extracellular region	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.044; coverage=94.664; evalue=1.4e-68; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005635	nuclear envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.044; coverage=94.664; evalue=1.4e-68; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005652	nuclear lamina	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.044; coverage=94.664; evalue=1.4e-68; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010369	chromocenter	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016363	nuclear matrix	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.205; coverage=90.603; evalue=5.1e-160; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031965	nuclear membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034399	nuclear periphery	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035861	site of double-strand break	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.044; coverage=94.664; evalue=1.4e-68; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G67230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.044; coverage=94.664; evalue=1.4e-68	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G65770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=49.639; coverage=96.52; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0767000	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.205; coverage=90.603; evalue=5.1e-160	UniProtKB/Swiss-Prot DAT 2026 current_release