基因注释
展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。
查询结果
| 基因 ID | LXL04_016972 |
|---|---|
| 当前查询版本 | OH1004 |
| 位置 | Chr03:138189086-138193388 (-) |
| 描述 | Similar to UPF3: Regulator of nonsense transcripts UPF3 (Arabidopsis thaliana OX%3D3702) |
| 注释来源组装 | GCA_047496595.1_OSU_TarKok_2.0 |
功能注释来源：OH1004 · LXL04_016972 · GCA_047496595.1_OSU_TarKok_2.0。
当前查询返回来自 OH1004 注释条目的 20 条 GO 注释和 5 条 KEGG 基因交叉引用；只下载当前查询结果，不据此推断 KEGG 通路成员。
拟南芥 / 水稻参考基因与文献
文献对应拟南芥或水稻参考基因；橡胶草的功能关联来自当前参考组装的蛋白序列比对。
拟南芥
| 参考基因 ID | 可能功能 | 对应论文 / DOI |
|---|---|---|
At1g33980 |
在核膜胞质侧招募UPF2，随后形成UPF1-UPF2-UPF3监视复合体（包括结合于阻滞核糖体释放因子的UPF1），据信激活NMD。 |
Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.2009 · DOI: 10.1073/pnas.0808902106 Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay.2010 · DOI: 10.1111/j.1469-8137.2009.03065.x Nonsense-mediated mRNA decay factors, UPF1 and UPF3, contribute to plant defense.2011 · DOI: 10.1093/pcp/pcr144
|
水稻
当前来源表未检出该物种的同源命中。
GO / KEGG
以下 GO/KEGG 注释源自上述 OH1004 注释条目，保留原始同源转移证据及覆盖度；其来源物种范围与拟南芥/水稻直接比对表不同。
| 类型 | ID | 名称 | 命名空间 | 证据 | 来源 |
|---|---|---|---|---|---|
| GO | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009611 | response to wounding | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009863 | salicylic acid mediated signaling pathway | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009867 | jasmonic acid mediated signaling pathway | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045727 | positive regulation of translation | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048571 | long-day photoperiodism | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000623 | negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=37.5; 覆盖度=25.316; E 值=7.78e-18; UniProt GO evidence=IPI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.744; 覆盖度=32.911; E 值=1.27e-20; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.744; 覆盖度=32.911; E 值=1.27e-20; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032991 | protein-containing complex | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=38.095; 覆盖度=35.443; E 值=8.71e-21; UniProt GO evidence=IPI:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035145 | exon-exon junction complex | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.744; 覆盖度=32.911; E 值=1.27e-20; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=38.095; 覆盖度=35.443; E 值=8.71e-21; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042162 | telomeric DNA binding | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=38.095; 覆盖度=35.443; E 值=8.71e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140311 | protein sequestering activity | 分子功能 | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=37.5; 覆盖度=25.316; E 值=7.78e-18; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G33980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=44.553; 覆盖度=108.439; E 值=1.18e-107 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:393929 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=37.267; 覆盖度=33.966; E 值=1.02e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:566608 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=38.095; 覆盖度=35.443; E 值=8.71e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:65109 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=39.744; 覆盖度=32.911; E 值=1.27e-20 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:65110 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=4; 一致性=37.5; 覆盖度=25.316; E 值=7.78e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release |