基因注释
展示当前基因的功能描述、GO/KEGG 注释及分物种同源证据。命中结果按查询版本、序列来源和比对证据分层显示。
查询结果
| 基因 ID | LXL04_006624 |
|---|---|
| 当前查询版本 | OH1004 |
| 位置 | Chr02:20172422-20176493 (+) |
| 描述 | Similar to CRWN4: Protein CROWDED NUCLEI 4 (Arabidopsis thaliana OX%3D3702) |
| 注释来源组装 | GCA_047496595.1_OSU_TarKok_2.0 |
功能注释来源:OH1004 · LXL04_006624 · GCA_047496595.1_OSU_TarKok_2.0。
当前查询返回来自 OH1004 注释条目的 19 条 GO 注释和 3 条 KEGG 基因交叉引用;只下载当前查询结果,不据此推断 KEGG 通路成员。
拟南芥 / 水稻参考基因与文献
文献对应拟南芥或水稻参考基因;橡胶草的功能关联来自当前参考组装的蛋白序列比对。
拟南芥
| 参考基因 ID | 可能功能 | 对应论文 / DOI |
|---|---|---|
At5g65770 |
SUN 蛋白复合多变复合物的组成部分,也称为 LINC 复合物,通过为细胞骨架丝提供多功能的外核膜附着位点,将核骨架和细胞骨架连接起来(相似性推测)。 | |
At1g67230 |
SUN 蛋白复合多变复合物的组成部分,也称为 LINC 复合物,通过为细胞骨架丝提供多功能的外核膜附着位点,将核骨架和细胞骨架连接起来(相似性推测)。 |
LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.053231 LITTLE NUCLEI 1 and 4 regulate nuclear morphology in Arabidopsis thaliana.2013 · DOI: 10.1093/pcp/pct031
|
水稻
| 参考基因 ID | 可能功能 | 对应论文 / DOI |
|---|---|---|
Os01g0767000 |
核结构的组成部分,可能在控制核的大小和形态方面发挥不同作用(可能)。 |
GO / KEGG
以下 GO/KEGG 注释源自上述 OH1004 注释条目,保留原始同源转移证据及覆盖度;其来源物种范围与拟南芥/水稻直接比对表不同。
| 类型 | ID | 名称 | 命名空间 | 证据 | 来源 |
|---|---|---|---|---|---|
| GO | GO:0006974 | DNA damage response | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006997 | nucleus organization | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043578 | nuclear matrix organization | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=3; 一致性=34.306; 覆盖度=83.527; E 值=7.15e-77; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097298 | regulation of nucleus size | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902584 | positive regulation of response to water deprivation | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=40.205; 覆盖度=90.603; E 值=5.1e-160; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000280 | regulation of root development | 生物过程 | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=40.205; 覆盖度=90.603; E 值=5.1e-160; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=29.044; 覆盖度=94.664; E 值=1.4e-68; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=29.044; 覆盖度=94.664; E 值=1.4e-68; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005635 | nuclear envelope | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=29.044; 覆盖度=94.664; E 值=1.4e-68; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005652 | nuclear lamina | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=29.044; 覆盖度=94.664; E 值=1.4e-68; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010369 | chromocenter | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016363 | nuclear matrix | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=40.205; 覆盖度=90.603; E 值=5.1e-160; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034399 | nuclear periphery | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035861 | site of double-strand break | 细胞组分 | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=29.044; 覆盖度=94.664; E 值=1.4e-68; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G67230 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=5; 一致性=29.044; 覆盖度=94.664; E 值=1.4e-68 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G65770 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=1; 一致性=49.639; 覆盖度=96.52; E 值=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0767000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed 同源转移; 命中排序=2; 一致性=40.205; 覆盖度=90.603; E 值=5.1e-160 | UniProtKB/Swiss-Prot DAT 2026 current_release |