Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA03G392940`
Query reference	TK1151
Location	Chr03:97462411-97464054 (-)
Description	Similar to NSP1: Protein NODULATION SIGNALING PATHWAY 1 (Lotus japonicus OX%3D34305)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002190 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 9 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13840`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At3g03450`	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway.	Gibberellin regulates Arabidopsis seed germination via RGL2, a GAI/RGA-like gene whose expression is up-regulated following imbibition.2002 · DOI: 10.1101/gad.969002 Gibberellin regulates Arabidopsis floral development via suppression of DELLA protein function.2004 · DOI: 10.1242/dev.00992 Floral homeotic genes are targets of gibberellin signaling in flower development.2004 · DOI: 10.1073/pnas.0402377101 Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis.2005 · DOI: 10.1007/s00425-005-0057-3 Phytohormone signalling pathways interact with sugars during seed germination and seedling development.2006 · DOI: 10.1093/jxb/erl096 Seed germination of GA-insensitive sleepy1 mutants does not require RGL2 protein disappearance in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048009 Genetic and molecular regulation by DELLA proteins of trichome development in Arabidopsis.2007 · DOI: 10.1104/pp.107.104794 High temperature-induced abscisic acid biosynthesis and its role in the inhibition of gibberellin action in Arabidopsis seeds.2008 · DOI: 10.1104/pp.107.113738 The gibberellic acid signaling repressor RGL2 inhibits Arabidopsis seed germination by stimulating abscisic acid synthesis and ABI5 activity.2008 · DOI: 10.1105/tpc.108.061515 Transcriptional diversification and functional conservation between DELLA proteins in Arabidopsis.2010 · DOI: 10.1093/molbev/msq012 A seed coat bedding assay shows that RGL2-dependent release of abscisic acid by the endosperm controls embryo growth in Arabidopsis dormant seeds.2010 · DOI: 10.1073/pnas.1012896107

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0408600`	Transcription factor involved in the control of strigolactone biosynthesis in roots through the activation of the beta-carotene isomerase D27, which participates in a pathway leading to biosynthesis of strigolactones.	Strigolactone biosynthesis in Medicago truncatula and rice requires the symbiotic GRAS-type transcription factors NSP1 and NSP2.2011 · DOI: 10.1105/tpc.111.089771

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.7; coverage=98.352; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.786; coverage=102.564; evalue=1.68e-180; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009610	response to symbiotic fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.786; coverage=102.564; evalue=1.68e-180; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009877	nodulation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.7; coverage=98.352; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042446	hormone biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.752; coverage=74.542; evalue=2.22e-88; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000032	regulation of secondary shoot formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.752; coverage=74.542; evalue=2.22e-88; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.7; coverage=98.352; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.786; coverage=102.564; evalue=1.68e-180; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.786; coverage=102.564; evalue=1.68e-180; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G13840	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.059; coverage=96.52; evalue=1.48e-151	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G49950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.671; coverage=73.443; evalue=3.63e-49	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mtr:11434050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.786; coverage=102.564; evalue=1.68e-180	UniProtKB/Swiss-Prot DAT 2026 current_release