Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_039343 |
|---|---|
| Query reference | OH1004 |
| Location | JAJTUU010000010.1:3577920-3581155 (+) |
| Description | Similar to VIL2: VIN3-like protein 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_039343 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g30200 |
Maybe involved in both the vernalization and photoperiod pathways by regulating gene expression. | |
At5g57380 |
Plays a central role in vernalization by mediating the initial transcriptional repression of the homeotic gene FLC, a floral repressor, after a cold treatment. |
Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.2004 · DOI: 10.1038/nature02195
|
At2g18880 |
Involved in both the vernalization and photoperiod pathways by regulating gene expression. | No verified direct reference in this release |
At3g24440 |
Involved in both the vernalization and photoperiod pathways by regulating expression of the related floral repressors FLOWERING LOCUS C (FLC) and FLOWERING LOCUS M (FLM). |
A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis.2006 · DOI: 10.1101/gad.1493306
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001666 | response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.594; coverage=107.744; evalue=1.14e-123; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009908 | flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010048 | vernalization response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IPI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032922 | circadian regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.504; coverage=101.515; evalue=1.06e-77; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.594; coverage=107.744; evalue=1.14e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048572 | short-day photoperiodism | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.528; coverage=51.684; evalue=3.36e-43; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048575 | short-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.528; coverage=51.684; evalue=3.36e-43; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048587 | regulation of short-day photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070417 | cellular response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.594; coverage=107.744; evalue=1.14e-123; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140719 | constitutive heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005677 | chromatin silencing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.594; coverage=107.744; evalue=1.14e-123; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031519 | PcG protein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062072 | histone H3K9me2/3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G18880 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.504; coverage=101.515; evalue=1.06e-77 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G24440 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.528; coverage=51.684; evalue=3.36e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G30200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=39.728; coverage=123.737; evalue=1.48e-144 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G57380 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.594; coverage=107.744; evalue=1.14e-123 | UniProtKB/Swiss-Prot DAT 2026 current_release |