Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_035878`
Query reference	OH1004
Location	Chr08:31103087-31105376 (-)
Description	Similar to PDE338: Protein PIGMENT DEFECTIVE 338%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035878 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71720`	RNA-binding protein that acts as an RNA chaperone to remodel RNA structure and activates their translation.	A novel RNA binding protein affects rbcL gene expression and is specific to bundle sheath chloroplasts in C4 plants.2013 · DOI: 10.1186/1471-2229-13-138 PBR1 selectively controls biogenesis of photosynthetic complexes by modulating translation of the large chloroplast gene Ycf1 in Arabidopsis.2016 · DOI: 10.1038/celldisc.2016.3
`At5g30510`	Required for optimal plastid performance in terms of photosynthesis and growth.	Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis.2012 · DOI: 10.1371/journal.pgen.1002669

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006412	translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.321; coverage=41.304; evalue=4.22e-28; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009416	response to light stimulus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009657	plastid organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010196	nonphotochemical quenching	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032544	plastid translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043489	RNA stabilization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045727	positive regulation of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005840	ribosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.321; coverage=41.304; evalue=4.22e-28; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.739; coverage=45.455; evalue=1.46e-26; UniProt GO evidence=IEA:TreeGrafter	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009579	thylakoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.66; coverage=65.02; evalue=4.72e-26; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990904	ribonucleoprotein complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.321; coverage=41.304; evalue=4.22e-28; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003735	structural constituent of ribosome	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.321; coverage=41.304; evalue=4.22e-28; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034336	misfolded RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140691	RNA folding chaperone	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G71720	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.529; coverage=83.992; evalue=1.99e-178	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G30510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.66; coverage=65.02; evalue=4.72e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	syc:syc0836_d	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.619; coverage=41.502; evalue=1.31e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	syn:slr1356	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.321; coverage=41.304; evalue=4.22e-28	UniProtKB/Swiss-Prot DAT 2026 current_release