Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_035645 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:26244991-26250174 (+) |
| Description | Similar to VPS60-2: Vacuolar protein sorting-associated protein 60.2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035645 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 42 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g04850 |
Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. | No verified direct reference in this release |
At3g10640 |
Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001919 | regulation of receptor recycling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006900 | vesicle budding from membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006914 | autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006997 | nucleus organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007040 | lysosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007080 | mitotic metaphase chromosome alignment | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008333 | endosome to lysosome transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010824 | regulation of centrosome duplication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031468 | nuclear membrane reassembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032511 | late endosome to vacuole transport via multivesicular body sorting pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036258 | multivesicular body assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0039702 | viral budding via host ESCRT complex | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043162 | ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046755 | viral budding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046761 | viral budding from plasma membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051469 | vesicle fusion with vacuole | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061763 | multivesicular body-lysosome fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=TAS:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061952 | midbody abscission | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071222 | cellular response to lipopolysaccharide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071225 | cellular response to muramyl dipeptide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071985 | multivesicular body sorting pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090148 | membrane fission | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097352 | autophagosome maturation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901673 | regulation of mitotic spindle assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902774 | late endosome to lysosome transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000421 | autophagosome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000776 | kinetochore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000815 | ESCRT III complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005635 | nuclear envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005643 | nuclear pore | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005765 | lysosomal membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005771 | multivesicular body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005828 | kinetochore microtubule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015630 | microtubule cytoskeleton | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030496 | midbody | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032585 | multivesicular body membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904930 | amphisome membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G10640 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.695; coverage=36.42; evalue=1.72e-126 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G04850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.903; coverage=36.574; evalue=9.75e-128 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:76959 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=47.598; coverage=35.34; evalue=1.14e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100172361 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=47.162; coverage=35.34; evalue=2.96e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:297995 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.598; coverage=35.34; evalue=1.14e-55 | UniProtKB/Swiss-Prot DAT 2026 current_release |