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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_032978
Query referenceOH1004
LocationChr07:32608588-32613686 (+)
DescriptionSimilar to AGO1: Protein argonaute 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032978 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 41 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g48410 Involved in RNA-mediated post-transcriptional gene silencing (PTGS).
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.2005 · DOI: 10.1073/pnas.0505461102
Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense.2006 · DOI: 10.1101/gad.1495506
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.2008 · DOI: 10.1016/j.cell.2008.02.034
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1.2008 · DOI: 10.1073/pnas.0805760105
Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing.2009 · DOI: 10.1371/journal.pgen.1000646
The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.2009 · DOI: 10.1261/rna.1646909
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis.2010 · DOI: 10.1038/nsmb.1866
AGO1 defines a novel locus of Arabidopsis controlling leaf development.1998 · DOI: 10.1093/emboj/17.1.170
At2g27880 Involved in RNA-mediated post-transcriptional gene silencing (PTGS).
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.2008 · DOI: 10.1016/j.cell.2008.02.034
The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.2008 · DOI: 10.1093/pcp/pcn043

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0800200 Essential for the progression of premeiotic mitosis and meiosis during sporogenesis.
A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.2007 · DOI: 10.1105/tpc.107.053199
Os02g0672200 Involved in the RNA silencing pathway, especially during antiviral responses. No verified direct reference in this release
Os04g0566500 Involved in the RNA silencing pathway, especially during antiviral responses. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006417regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.346; coverage=100.421; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007140male meiotic nuclear divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007143female meiotic nuclear divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009561megagametogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009615response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.346; coverage=100.421; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009616RNAi-mediated antiviral immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009733response to auxinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009753response to jasmonic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.403; coverage=99.368; evalue=0.0; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009850auxin metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009955adaxial/abaxial pattern specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009965leaf morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010218response to far red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010267ta-siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010305leaf vascular tissue pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010589leaf proximal/distal pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016441post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030154cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031047regulatory ncRNA-mediated gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035195miRNA-mediated post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035278miRNA-mediated gene silencing by inhibition of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045087innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048830adventitious root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051607defense response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0055046microgametogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098542defense response to other organismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.346; coverage=100.421; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903343positive regulation of meiotic DNA double-strand break formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005731nucleolus organizer regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0; UniProt GO evidence=IMP:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.346; coverage=100.421; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036464cytoplasmic ribonucleoprotein granuleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990904ribonucleoprotein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004521RNA endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035197siRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035198miRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G48410KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.883; coverage=97.474; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G27880KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.346; coverage=100.421; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0672200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=55.403; coverage=99.368; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0800200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.361; coverage=92.211; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release