Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_030958 |
|---|---|
| Query reference | OH1004 |
| Location | Chr06:125653252-125658674 (+) |
| Description | Similar to At4g04790: Pentatricopeptide repeat-containing protein At4g04790%2C mitochondrial (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_030958 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 4 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g04790 |
Pentatricopeptide repeat-containing protein At4g04790, mitochondrial. | No verified direct reference in this release |
At4g21880 |
Pentatricopeptide repeat-containing protein At4g21880, mitochondrial. | No verified direct reference in this release |
At5g65560 |
Pentatricopeptide repeat-containing protein At5g65560. | No verified direct reference in this release |
At2g31400 |
Involved in nuclear gene expression via the retrograde plastid-to-nucleus signaling. |
Signals from chloroplasts converge to regulate nuclear gene expression.2007 · PMID: 17395793 Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1.2009 · DOI: 10.1111/j.1469-8137.2008.02729.x
|
At1g62590 |
Pentatricopeptide repeat-containing protein At1g62590. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.804; coverage=84.396; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.468; coverage=32.118; evalue=7.29e-17; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.586; coverage=48.178; evalue=7.03e-18; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004016 | adenylate cyclase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.468; coverage=32.118; evalue=7.29e-17; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G62590 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.468; coverage=32.118; evalue=7.29e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G04790 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.804; coverage=84.396; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G21880 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.343; coverage=80.41; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G65560 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.586; coverage=48.178; evalue=7.03e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release |