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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_028312
Query referenceOH1004
LocationChr06:37335921-37341040 (-)
DescriptionSimilar to GLR3.1: Glutamate receptor 3.1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_028312 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17260 Glutamate-gated receptor that probably acts as a non- selective cation channel.
De-regulated expression of the plant glutamate receptor homolog AtGLR3.1 impairs long-term Ca2+-programmed stomatal closure.2009 · DOI: 10.1111/j.1365-313x.2009.03789.x
At2g32400 Glutamate-gated receptor that probably acts as a non-selective cation channel. No verified direct reference in this release
At1g05200 Glutamate-gated receptor that probably acts as a non-selective cation channel, at least in hypocotyls (Probable).
AtGLR3.4, a glutamate receptor channel-like gene is sensitive to touch and cold.2005 · DOI: 10.1007/s00425-005-1551-3
Glutamate receptor subtypes evidenced by differences in desensitization and dependence on the GLR3.3 and GLR3.4 genes.2008 · DOI: 10.1104/pp.107.108134
Dual localization of plant glutamate receptor AtGLR3.4 to plastids and plasmamembrane.2011 · DOI: 10.1016/j.bbabio.2010.11.008
Interacting glutamate receptor-like proteins in Phloem regulate lateral root initiation in Arabidopsis.2013 · DOI: 10.1105/tpc.113.110668
Glutamate Receptor Homolog3.4 is Involved in Regulation of Seed Germination Under Salt Stress in Arabidopsis.2018 · DOI: 10.1093/pcp/pcy034
At5g11180 Glutamate-gated receptor that probably acts as a non-selective cation channel. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0585200 Glutamate-gated receptor that probably acts as a non-selective cation channel.
A rice glutamate receptor-like gene is critical for the division and survival of individual cells in the root apical meristem.2006 · DOI: 10.1105/tpc.105.037713

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006816calcium ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006874intracellular calcium ion homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=NAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=IMP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009611response to woundingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010118stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019722calcium-mediated signalingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070417cellular response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071230cellular response to amino acid stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071260cellular response to mechanical stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071311cellular response to acetateBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901701cellular response to oxygen-containing compoundBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.422; coverage=83.264; evalue=5.58e-58; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005262calcium channel activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008066glutamate receptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015276ligand-gated monoatomic ion channel activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0038023signaling receptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G05200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.973; coverage=92.259; evalue=4.16e-57UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G17260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=35.396; coverage=84.519; evalue=3.94e-61UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G32400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.422; coverage=83.264; evalue=5.58e-58UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G11180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.678; coverage=88.494; evalue=2.96e-56UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:124544569KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.606; coverage=82.218; evalue=8.45e-56UniProtKB/Swiss-Prot DAT 2026 current_release