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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_025754
Query referenceOH1004
LocationChr05:116623421-116628320 (+)
DescriptionSimilar to MADS4: Agamous-like MADS-box protein MADS4 (Vitis vinifera OX%3D29760)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025754 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g24260 Probable transcription factor active in inflorescence development and floral organogenesis.
Complexes of MADS-box proteins are sufficient to convert leaves into floral organs.2001 · DOI: 10.1038/35054083
Mutant analysis, protein-protein interactions and subcellular localization of the Arabidopsis B sister (ABS) protein.2005 · DOI: 10.1007/s00438-005-0010-y

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001708cell fate specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.092; coverage=102.049; evalue=2.52e-121; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009888tissue developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=73.092; coverage=102.049; evalue=2.52e-121; UniProt GO evidence=NAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010093specification of floral organ identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010214seed coat developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048440carpel developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.888; coverage=102.049; evalue=2.42e-118; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048481plant ovule developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048833specification of floral organ numberBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080001mucilage extrusion from seed coatBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000977RNA polymerase II transcription regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.893; coverage=99.59; evalue=3.86e-143; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.893; coverage=99.59; evalue=3.86e-143; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G24260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=73.896; coverage=102.049; evalue=5.5e-120UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGvvi:100232869KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=81.893; coverage=99.59; evalue=3.32e-144UniProtKB/Swiss-Prot DAT 2026 current_release