Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_025234`
Query reference	OH1004
Location	Chr05:108307407-108328505 (+)
Description	Similar to ISE2: DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025234 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70070`	RNA helicase involved in group II intron splicing.	Identification of a developmental transition in plasmodesmatal function during embryogenesis in Arabidopsis thaliana.2002 · DOI: 10.1242/dev.129.5.1261 INCREASED SIZE EXCLUSION LIMIT 2 encodes a putative DEVH box RNA helicase involved in plasmodesmata function during Arabidopsis embryogenesis.2007 · DOI: 10.1105/tpc.106.045666 Loss of INCREASED SIZE EXCLUSION LIMIT (ISE)1 or ISE2 increases the formation of secondary plasmodesmata.2010 · DOI: 10.1016/j.cub.2010.03.064 The chloroplastic DEVH-box RNA helicase INCREASED SIZE EXCLUSION LIMIT 2 involved in plasmodesmata regulation is required for group II intron splicing.2016 · DOI: 10.1111/pce.12603
`At1g24190`	Acts as a transcriptional repressor.	Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses.2005 · DOI: 10.1105/tpc.105.033043
`At1g70060`	Acts as a transcriptional repressor.	No verified direct reference in this release
`At5g15020`	Acts as a transcriptional repressor.	No verified direct reference in this release
`At3g01320`	Acts as a transcriptional repressor.	PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors.2010 · DOI: 10.1016/j.jmb.2009.11.065

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000373	Group II intron splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000712	resolution of meiotic recombination intermediates	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010497	plasmodesmata-mediated intercellular transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016441	post-transcriptional gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016554	cytidine to uridine editing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031047	regulatory ncRNA-mediated gene silencing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901259	chloroplast rRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IMP:CACAO	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000118	histone deacetylase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000785	chromatin	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010494	cytoplasmic stress granule	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070822	Sin3-type complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003714	transcription corepressor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003724	RNA helicase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016887	ATP hydrolysis activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G24190	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.56; coverage=32.858; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G70060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.1; coverage=34.686; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G70070	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.792; coverage=47.526; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release