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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_024061
Query referenceOH1004
LocationChr05:79300965-79302525 (-)
DescriptionSimilar to CMT3: DNA (cytosine-5)-methyltransferase CMT3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_024061 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 14 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g69770 Involved in the CpXpG methylation (e.g. CHG cytosine) and in gene silencing.
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.2001 · DOI: 10.1126/science.1059745
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene.2001 · DOI: 10.1101/gad.905701
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3.2002 · DOI: 10.1016/s0960-9822(01)00622-4
JMJ24 targets CHROMOMETHYLASE3 for proteasomal degradation in Arabidopsis.2016 · DOI: 10.1101/gad.274647.115

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0226800 Involved in CpXpG DNA methylation (By similarity). No verified direct reference in this release
UniProt: Q5KQL9 Involved in CpXpG DNA methylation. No verified direct reference in this release
Os10g0104900 Involved in CpXpG DNA methylation. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006346DNA methylation-dependent constitutive heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IDA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010069zygote asymmetric cytokinesis in embryo sacBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032259methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044027negative regulation of gene expression via chromosomal CpG island methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045814negative regulation of gene expression, epigeneticBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141010transposable element silencing by siRNA-mediated DNA methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.741; coverage=68.571; evalue=1.13e-32; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003886DNA (cytosine-5-)-methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031625ubiquitin protein ligase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051719DNA (cytosine-5-)-methyltransferase activity, acting on CpN substratesMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051720DNA (cytosine-5-)-methyltransferase activity, acting on CpNpG substratesMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.741; coverage=68.571; evalue=1.13e-32; UniProt GO evidence=IDA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G69770KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.805; coverage=71.746; evalue=2.04e-44UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0226800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.625; coverage=71.111; evalue=2.71e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0224800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.813; coverage=69.524; evalue=2.07e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0224900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.813; coverage=69.524; evalue=2.07e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os10g0104900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.741; coverage=68.571; evalue=1.13e-32UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4338140KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.813; coverage=69.524; evalue=2.07e-38UniProtKB/Swiss-Prot DAT 2026 current_release