Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_022958 |
|---|---|
| Query reference | OH1004 |
| Location | Chr05:15140563-15145030 (+) |
| Description | Similar to TRAF1B: TNF receptor-associated factor homolog 1b (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_022958 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g04300 |
Functions redundantly with TRAF1A in the regulation of plant immune response. | |
At5g43560 |
Functions redundantly with TRAF1B in the regulation of plant immune response. | |
At3g11910 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. | No verified direct reference in this release |
At5g06600 |
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. | No verified direct reference in this release |
At3g58210 |
MATH domain and coiled-coil domain-containing protein At3g58210. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009867 | jasmonic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010078 | maintenance of root meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031647 | regulation of protein stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070646 | protein modification by small protein removal | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905037 | autophagosome organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000280 | regulation of root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043424 | protein histidine kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.68; coverage=116.667; evalue=0.0; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G04300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.438; coverage=119.851; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G11910 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.094; coverage=13.482; evalue=3.57e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G58210 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.231; coverage=13.8; evalue=4.65e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G06600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.094; coverage=13.482; evalue=1.14e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G43560 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.68; coverage=116.667; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |