Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_020624 |
|---|---|
| Query reference | OH1004 |
| Location | Chr04:96812994-96814640 (+) |
| Description | Similar to At1g11780: Alpha-ketoglutarate-dependent dioxygenase alkB (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_020624 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 35 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g11780 |
May catalyze DNA N6-methyladenine (6mA) demethylation in gene-expression and seed-germination regulation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0002101 | tRNA wobble cytosine modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006446 | regulation of translational initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006448 | regulation of translational elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010029 | regulation of seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035513 | oxidative RNA demethylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042245 | RNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048589 | developmental growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070129 | regulation of mitochondrial translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141137 | positive regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990983 | regulation of translational initiation by tRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000791 | euchromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005759 | mitochondrial matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.522; coverage=81.176; evalue=4e-34; UniProt GO evidence=TAS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.571; coverage=96.765; evalue=5.56e-33; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000049 | tRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008198 | ferrous iron binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035514 | DNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035515 | oxidative RNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035516 | broad specificity oxidative DNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042056 | chemoattractant activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.571; coverage=96.765; evalue=5.56e-33; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140078 | class I DNA-(apurinic or apyrimidinic site) endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141131 | DNA N6-methyladenine demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0160290 | 2-oxoglutarate-dependent tRNA 5-methylcytidine formyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990984 | tRNA demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G11780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.517; coverage=102.353; evalue=1.46e-165 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0285575 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=32.853; coverage=102.059; evalue=1.3e-52 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:8846 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.522; coverage=81.176; evalue=4e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:211064 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.577; coverage=104.412; evalue=2.87e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539935 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.571; coverage=96.765; evalue=5.56e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release |