Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_018487`
Query reference	OH1004
Location	Chr04:13625008-13629386 (-)
Description	Similar to MYB3R5: Transcription factor MYB3R-5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_018487 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02320`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity).	No verified direct reference in this release
`At3g09370`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity).	Transcriptional repression by MYB3R proteins regulates plant organ growth.2015 · DOI: 10.15252/embj.201490899
`At5g11510`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters.	R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana.2007 · DOI: 10.1242/dev.02801 Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators.2010 · DOI: 10.1073/pnas.0912492107 Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis.2011 · DOI: 10.1104/pp.111.180836 Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana.2015 · DOI: 10.4161/15592324.2014.990817
`At4g32730`	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters.	R1R2R3-Myb proteins positively regulate cytokinesis through activation of KNOLLE transcription in Arabidopsis thaliana.2007 · DOI: 10.1242/dev.02801 Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental defects and preferential down-regulation of multiple G2/M-specific genes in Arabidopsis.2011 · DOI: 10.1104/pp.111.180836

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0841500`	Transcription factor involved in abiotic stress responses.	Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis.2007 · DOI: 10.1104/pp.106.094532 Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes.2009 · DOI: 10.1104/pp.108.133454

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006974	DNA damage response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.961; coverage=82.4; evalue=2.38e-138; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008285	negative regulation of cell population proliferation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.524; coverage=89.12; evalue=5.15e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009733	response to auxin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.961; coverage=82.4; evalue=2.38e-138; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009751	response to salicylic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009753	response to jasmonic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.961; coverage=82.4; evalue=2.38e-138; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032465	regulation of cytokinesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032875	regulation of DNA endoreduplication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.524; coverage=89.12; evalue=5.15e-119; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901002	positive regulation of response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.524; coverage=89.12; evalue=5.15e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901181	negative regulation of cellular response to caffeine	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902584	positive regulation of response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.524; coverage=89.12; evalue=5.15e-119; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005819	spindle	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009524	phragmoplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070176	DRM complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.961; coverage=82.4; evalue=2.38e-138; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.961; coverage=82.4; evalue=2.38e-138; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.676; coverage=27.68; evalue=2.8e-82; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G09370	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.961; coverage=82.4; evalue=2.38e-138	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G32730	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=71.676; coverage=27.68; evalue=2.8e-82	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G02320	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.528; coverage=92.16; evalue=5.8e-141	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G11510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=71.429; coverage=28.0; evalue=1.97e-84	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0841500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.524; coverage=89.12; evalue=5.15e-119	UniProtKB/Swiss-Prot DAT 2026 current_release