Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_016519`
Query reference	OH1004
Location	Chr03:125292051-125296497 (+)
Description	Similar to SPA3: Protein SPA1-RELATED 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016519 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 18 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15354`	Repressor of photomorphogenesis in the light.	The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light.2003 · DOI: 10.1046/j.1365-313x.2003.01813.x Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability.2006 · DOI: 10.1242/dev.02481
`At1g53090`	Repressor of photomorphogenesis in the light.	The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light.2003 · DOI: 10.1046/j.1365-313x.2003.01813.x Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability.2006 · DOI: 10.1242/dev.02481
`UniProt: Q9SYX2`	Controls normal photoperiodic flowering and regulates circadian rhythms.	No verified direct reference in this release
`At4g11110`	Involved in suppression of photomorphogenesis in dark-grown seedlings.	The SPA quartet: a family of WD-repeat proteins with a central role in suppression of photomorphogenesis in arabidopsis.2004 · DOI: 10.1105/tpc.104.024216 Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009585	red, far-red light phototransduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009637	response to blue light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.134; coverage=99.498; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009640	photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010017	red or far-red light signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010100	negative regulation of photomorphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010114	response to red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010218	response to far red light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048575	short-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000028	regulation of photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.134; coverage=99.498; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016604	nuclear body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004672	protein kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G53090	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=58.134; coverage=99.498; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G46340	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.763; coverage=86.826; evalue=1.27e-166	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G15354	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.69; coverage=103.639; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G11110	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.58; coverage=84.191; evalue=3.58e-165	UniProtKB/Swiss-Prot DAT 2026 current_release