Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_008822 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:109744573-109750028 (+) |
| Description | Similar to LDL3: Lysine-specific histone demethylase 1 homolog 3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_008822 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
UniProt: F4JLS1 |
Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin. | No verified direct reference in this release |
At3g10390 |
Probable histone demethylase that promotes flowering independently of the photoperiod and vernalization pathways by repressing FLOWERING LOCUS C (FLC), a floral repressor that blocks the transition from vegetative to reproductive development. | No verified direct reference in this release |
At1g62830 |
Probable histone demethylase that reduces the levels of histone H3 'Lys-4' methylation in chromatin of the floral repressor FLOWERING LOCUS C (FLC) and the sporophytically silenced floral repressor FWA. |
Arabidopsis relatives of the human lysine-specific Demethylase1 repress the expression of FWA and FLOWERING LOCUS C and thus promote the floral transition.2007 · DOI: 10.1105/tpc.107.052373
|
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os02g0755200 |
Probable histone demethylase. | No verified direct reference in this release |
Os08g0143400 |
Probable histone demethylase. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006325 | chromatin organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.532; coverage=84.13; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009627 | systemic acquired resistance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046208 | spermine catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048364 | root development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.871; coverage=28.431; evalue=9.2e-91; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903602 | thermospermine catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904629 | response to diterpene | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000028 | regulation of photoperiodism, flowering | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.871; coverage=28.431; evalue=9.2e-91; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.532; coverage=84.13; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016491 | oxidoreductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.532; coverage=84.13; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.532; coverage=84.13; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032452 | histone demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042800 | histone H3K4 methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.871; coverage=28.431; evalue=9.2e-91; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050660 | flavin adenine dinucleotide binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0052901 | spermine oxidase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141052 | histone H3 demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.532; coverage=84.13; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G62830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.871; coverage=28.431; evalue=9.2e-91 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G10390 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.481; coverage=28.002; evalue=5.33e-93 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G16310 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.532; coverage=84.13; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os02g0755200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.911; coverage=27.635; evalue=2.02e-93 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os08g0143400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.002; coverage=27.022; evalue=9.62e-91 | UniProtKB/Swiss-Prot DAT 2026 current_release |