RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_006533
Query referenceOH1004
LocationChr02:13049102-13057594 (+)
DescriptionSimilar to WDR12: Ribosome biogenesis protein WDR12 homolog (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_006533 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 41 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g15550 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. No verified direct reference in this release
At5g61010 Influences the subcellular localization patterns of other exocyst complex proteins (e.g. SEC5A, SEC15A, SEC15B and EXO84B) leading to their recruitment to exocyst, well-defined large punctate structures throughout the cytosol.
EXPO, an exocyst-positive organelle distinct from multivesicular endosomes and autophagosomes, mediates cytosol to cell wall exocytosis in Arabidopsis and tobacco cells.2010 · DOI: 10.1105/tpc.110.080697
Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals.2014 · DOI: 10.1091/mbc.e13-10-0586
At5g58430 Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.
Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole.2013 · DOI: 10.1111/tra.12101
The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
At1g07000 Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.
The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction.2011 · DOI: 10.1093/jxb/erq402
The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis.2012 · DOI: 10.1105/tpc.112.104463
The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0600400 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Biological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000466maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Biological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0002237response to molecule of bacterial originBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0002238response to molecule of fungal originBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006887exocytosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006955immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009617response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=TAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009620response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=TAS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009789positive regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015031protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042545cell wall modificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050832defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0052542defense response by callose depositionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090333regulation of stomatal closureBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900150regulation of defense response to fungusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900426positive regulation of defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901332negative regulation of lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902290positive regulation of defense response to oomycetesBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903533regulation of protein targetingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903553positive regulation of extracellular exosome assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000145exocystCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012505endomembrane systemCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030687preribosome, large subunit precursorCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031982vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045335phagocytic vesicleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070062extracellular exosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080008Cul4-RING E3 ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005546phosphatidylinositol-4,5-bisphosphate bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043021ribonucleoprotein complex bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905761SCF ubiquitin ligase complex bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G07000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.008; coverage=56.71; evalue=1.65e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G15550KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.281; coverage=35.758; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G58430KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.259; coverage=57.056; evalue=3.63e-96UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G61010KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.5; coverage=56.797; evalue=4.81e-145UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0600400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.504; coverage=35.584; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4343819KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=63.504; coverage=35.584; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release