RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDLXL04_004000
Query referenceOH1004
LocationChr01:121294480-121297563 (+)
DescriptionSimilar to PED1: 3-ketoacyl-CoA thiolase 2%2C peroxisomal (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_004000 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g33150 Involved in long chain fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth.
Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence.2002 · DOI: 10.1104/pp.010843
Gene-specific involvement of beta-oxidation in wound-activated responses in Arabidopsis.2004 · DOI: 10.1104/pp.104.039925
Arabidopsis 3-ketoacyl-CoA thiolase-2 (KAT2), an enzyme of fatty acid β-oxidation, is involved in ABA signal transduction.2011 · DOI: 10.1093/pcp/pcr008
2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxysomal fatty acid beta-oxidation.1998 · DOI: 10.1105/tpc.10.2.183
At1g04710 Involved in fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth. No verified direct reference in this release
At5g48880 Probably involved in long chain fatty-acid beta-oxidation prior to gluconeogenesis during germination and subsequent seedling growth.
Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings.2001 · DOI: 10.1046/j.1365-313x.2001.01095.x
Gene-specific involvement of beta-oxidation in wound-activated responses in Arabidopsis.2004 · DOI: 10.1104/pp.104.039925

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006633fatty acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.911; coverage=95.117; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006635fatty acid beta-oxidationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009611response to woundingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009695jasmonic acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009789positive regulation of abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010111glyoxysome organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010124phenylacetate catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010597green leaf volatile biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=77.162; coverage=95.754; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031408oxylipin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033540fatty acid beta-oxidation using acyl-CoA oxidaseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.402; coverage=92.357; evalue=5.4e-158; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.011; coverage=96.603; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005777peroxisomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005782peroxisomal matrixCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.402; coverage=92.357; evalue=5.4e-158; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009514glyoxysomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003985acetyl-CoA C-acetyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.402; coverage=92.357; evalue=5.4e-158; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003988acetyl-CoA C-acyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050633acetyl-CoA C-myristoyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.402; coverage=92.357; evalue=5.4e-158; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G04710KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=79.911; coverage=95.117; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G33150KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.366; coverage=95.754; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G48880KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=69.011; coverage=96.603; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:501072KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.402; coverage=92.357; evalue=5.4e-158UniProtKB/Swiss-Prot DAT 2026 current_release