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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_003523
Query referenceOH1004
LocationChr01:82015738-82021474 (-)
DescriptionSimilar to ATX2: Histone-lysine N-methyltransferase ATX2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003523 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 41 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g05830 Histone methyltransferase.
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions.2008 · DOI: 10.1105/tpc.107.056614
Combinatorial functions of diverse histone methylations in Arabidopsis thaliana flowering time regulation.2014 · DOI: 10.1111/nph.12493
At2g31650 May participate in target-gene transcriptional regulation and associated histone methylation.
Combinatorial functions of diverse histone methylations in Arabidopsis thaliana flowering time regulation.2014 · DOI: 10.1111/nph.12493
Arabidopsis homolog of trithorax1 (ATX1) is required for cell production, patterning, and morphogenesis in root development.2014 · DOI: 10.1093/jxb/eru355
At5g53430 Histone methyltransferase. No verified direct reference in this release
At4g27910 Histone methyltransferase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0134500 Possesses histone H3 methyltransferase activity in vitro.
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.2014 · DOI: 10.1104/pp.113.228049

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009294DNA-mediated transformationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.583; coverage=43.165; evalue=6.5e-72; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009414response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.579; coverage=79.496; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009909regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010093specification of floral organ identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010228vegetative to reproductive phase transition of meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0018022peptidyl-lysine methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030036actin cytoskeleton organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032259methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048578positive regulation of long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.579; coverage=79.496; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090333regulation of stomatal closureBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904961quiescent center organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000023regulation of lateral root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000067regulation of root morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000280regulation of root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.583; coverage=43.165; evalue=6.5e-72; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031011Ino80 complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.583; coverage=43.165; evalue=6.5e-72; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048188Set1C/COMPASS complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048471perinuclear region of cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008276protein methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010314phosphatidylinositol-5-phosphate bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042054histone methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.579; coverage=79.496; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042800histone H3K4 methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140566histone reader activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140945histone H3K4 monomethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.579; coverage=79.496; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140946histone H3K4 dimethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140999histone H3K4 trimethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G05830KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.028; coverage=89.568; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G31650KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.144; coverage=90.018; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G27910KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.282; coverage=43.076; evalue=1.48e-67UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G53430KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.583; coverage=43.165; evalue=6.5e-72UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os09g0134500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.579; coverage=79.496; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release