Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_003093`
Query reference	OH1004
Location	Chr01:67283727-67286943 (+)
Description	Similar to PEX10: Peroxisome biogenesis factor 10 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_003093 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26350`	E3 ubiquitin-protein ligase component of a retrotranslocation channel required for peroxisome organization by mediating export of the PEX5 receptor from peroxisomes to the cytosol, thereby promoting PEX5 recycling.	AthPEX10, a nuclear gene essential for peroxisome and storage organelle formation during Arabidopsis embryogenesis.2003 · DOI: 10.1073/pnas.1633697100 An Arabidopsis pex10 null mutant is embryo lethal, implicating peroxisomes in an essential role during plant embryogenesis.2003 · DOI: 10.1104/pp.103.031252 Requirement of the C3HC4 zinc RING finger of the Arabidopsis PEX10 for photorespiration and leaf peroxisome contact with chloroplasts.2007 · DOI: 10.1073/pnas.0610402104 Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants.2007 · DOI: 10.1093/pcp/pcm053 Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import.2010 · DOI: 10.1073/pnas.1009174107 Arabidopsis RING peroxins are E3 ubiquitin ligases that interact with two homologous ubiquitin receptor proteins(F).2013 · DOI: 10.1111/jipb.12014 Peroxisomal ubiquitin-protein ligases peroxin2 and peroxin10 have distinct but synergistic roles in matrix protein import and peroxin5 retrotranslocation in Arabidopsis.2014 · DOI: 10.1104/pp.114.247148

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000209	protein polyubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=IDA:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006513	protein monoubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=ISS:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006635	fatty acid beta-oxidation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007031	peroxisome organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009853	photorespiration	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010381	peroxisome-chloroplast membrane tethering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016558	protein import into peroxisome matrix	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016562	protein import into peroxisome matrix, receptor recycling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.551; coverage=91.163; evalue=1.3e-36; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034614	cellular response to reactive oxygen species	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=IDA:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=ISS:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044721	protein import into peroxisome matrix, substrate release	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=ISS:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005777	peroxisome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005778	peroxisomal membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008320	protein transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36; UniProt GO evidence=ISS:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0061630	ubiquitin protein ligase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G26350	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.514; coverage=99.535; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ddi:DDB_G0282693	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.551; coverage=91.163; evalue=1.3e-36	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:5192	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.582; coverage=91.86; evalue=5.1e-36	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	xla:108697631	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.721; coverage=75.116; evalue=1.18e-34	UniProtKB/Swiss-Prot DAT 2026 current_release