Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_000402 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:7458122-7459421 (+) |
| Description | Similar to OTU4: OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000402 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g57810 |
Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. | No verified direct reference in this release |
At2g38025 |
Hydrolase that can remove conjugated ubiquitin from proteins in vitro and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006508 | proteolysis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.761; coverage=67.619; evalue=6.02e-12; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016579 | protein deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.761; coverage=67.619; evalue=6.02e-12; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030968 | endoplasmic reticulum unfolded protein response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.962; coverage=50.476; evalue=1.91e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035523 | protein K29-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.588; coverage=41.587; evalue=6.19e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035871 | protein K11-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.588; coverage=41.587; evalue=6.19e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.962; coverage=50.476; evalue=1.91e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990167 | protein K27-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.588; coverage=41.587; evalue=6.19e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990168 | protein K33-linked deubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.588; coverage=41.587; evalue=6.19e-08; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.962; coverage=50.476; evalue=1.91e-15; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.391; coverage=58.413; evalue=3.97e-88; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.391; coverage=58.413; evalue=3.97e-88; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004843 | cysteine-type deubiquitinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.391; coverage=58.413; evalue=3.97e-88; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G38025 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.962; coverage=50.476; evalue=1.91e-15 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G57810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.391; coverage=58.413; evalue=3.97e-88 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:139562 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.588; coverage=41.587; evalue=6.19e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:444600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=26.761; coverage=67.619; evalue=6.02e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xtr:496720 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.286; coverage=44.444; evalue=5.47e-09 | UniProtKB/Swiss-Prot DAT 2026 current_release |