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Rubber Dandelion TF Binding Site Prediction

Predict candidate transcription-factor binding sites from submitted DNA sequences or 4000 bp upstream regions using TF binding motifs. Results are motif-supported computational candidates, not experimentally validated regulation.

442motifs
45224upstream sequences
4000 bpprediction length

Scan 4000 bp Upstream by Gene ID

Examples TkA01G000070 LXL04_000004

Scan Submitted DNA Sequence

Example CDS

Candidate Binding Sites

Submitted Length
38 bp
Threshold
0.95
Motif Source
JASPAR2024 CORE plants non-redundant

Download Current Query TSV

Total candidate sites: 52

DOF1.8 / MA0981.2 / Dof: 18 candidate TF genes; 1 sites

Donor TF: DOF1.5;DOF1.7;DOF5.8;DOF1.3;DOF1.1;DOF1; confidence: high

TkA03G519950 TkA08G158380 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 TkA03G348550 TkA07G419940 TkA04G044830 TkA04G045600 TkA03G384240 TkA03G385860 TkA01G603240 TkA08G051130 TkA05G407520 TkA06G476300 TkA08G003540 TkA07G314540
DOF2.4 / MA0982.2 / Dof: 11 candidate TF genes; 1 sites

Donor TF: DOF3.4;DOF2.2;DOF5.4;DOF2.1;DOF4.4; confidence: high

TkA06G156760 TkA05G432650 TkA07G411300 TkA08G109250 TkA04G044830 TkA04G045600 TkA05G351190 TkA01G076090 TkA08G051130 TkA01G603240 TkA03G514870
DOF5.6 / MA0983.2 / Dof: 18 candidate TF genes; 1 sites

Donor TF: DOF5.3;DOF5.7;DOF3.6;DOF5.8;DOF5.4;DOF4.6; confidence: high

TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA04G044830 TkA04G045600 TkA08G051130 TkA05G432650 TkA06G156760 TkA07G411300 TkA08G109250 TkA02G455650 TkA05G407520 TkA06G476300 TkA08G003540 TkA03G384240 TkA03G385860 TkA03G430400
DOF5.7 / MA0984.2 / Dof: 16 candidate TF genes; 1 sites

Donor TF: DOF1.7;DOF5.3;DOF5.7;DOF5.8;DOF5.4;DOF3.7; confidence: high

TkA08G158380 TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA07G411300 TkA08G109250 TkA02G455650 TkA05G407520 TkA06G476300 TkA08G003540 TkA03G384240 TkA03G385860 TkA03G430400 TkA07G314540
DOF5.3 / MA1071.2 / Dof: 16 candidate TF genes; 1 sites

Donor TF: DOF5.3;DOF5.7;DOF5.8;DOF1.3;DOF5.4; confidence: high

TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 TkA07G411300 TkA08G109250 TkA02G455650 TkA03G348550 TkA07G419940 TkA03G384240 TkA03G385860 TkA03G430400
DOF3.1 / MA2379.1 / Dof: 18 candidate TF genes; 1 sites

Donor TF: DOF3.4;DOF3.2;DOF3.6;DOF3.5;DOF3.7;DOF2.1;DOF1.1; confidence: high

TkA06G156760 TkA01G480580 TkA08G220950 TkA04G044830 TkA04G045600 TkA08G051130 TkA05G432650 TkA02G425120 TkA05G407520 TkA06G476300 TkA08G003540 TkA05G351190 TkA01G076090 TkA01G603240 TkA03G384240 TkA03G385860 TkA03G430400 TkA07G314540
TF ID Unified Gene ID TF family motif ID Start End Strand Matched Sequence Normalized Score Raw Score Consensus Motif Source Evidence Tier
PK20392.1 submitted_sequence shared_or_unassigned MA2082.1 8 13 - ATTATT 1.000 10.2 AATAAT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA03G519950 TkA08G158380 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 +12 submitted_sequence Dof MA0981.2 18 21 + AAAG 1.000 6.587 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA06G156760 TkA05G432650 TkA07G411300 TkA08G109250 TkA04G044830 TkA04G045600 +5 submitted_sequence Dof MA0982.2 18 21 + AAAG 1.000 6.397 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA06G156760 TkA01G480580 TkA08G220950 TkA04G044830 TkA04G045600 TkA08G051130 +12 submitted_sequence Dof MA2379.1 18 21 - AAAG 1.000 6.022 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA02G499520 +10 submitted_sequence Dof MA1071.2 18 21 + AAAG 1.000 6.42 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA04G044830 TkA04G045600 +12 submitted_sequence Dof MA0983.2 18 21 + AAAG 1.000 6.936 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TkA08G158380 TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 +10 submitted_sequence Dof MA0984.2 18 22 + AAAGA 1.000 7.445 AAAGA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PHYPADRAFT_140773 submitted_sequence shared_or_unassigned MA0987.2 18 21 + AAAG 1.000 6.923 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PHYPADRAFT_38837 submitted_sequence shared_or_unassigned MA1022.2 18 21 + AAAG 1.000 6.646 AAAG JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK01144.1 submitted_sequence shared_or_unassigned MA2056.1 18 21 - AAAG 1.000 7.388 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK07031.1 submitted_sequence shared_or_unassigned MA2062.1 18 21 - AAAG 1.000 6.74 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK15337.1 submitted_sequence shared_or_unassigned MA2070.1 18 21 - AAAG 1.000 6.865 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PK16340.1 submitted_sequence shared_or_unassigned MA2073.1 18 21 - AAAG 1.000 6.621 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
PpDof6 submitted_sequence Dof MA2394.1 18 21 - AAAG 1.000 6.655 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
e_gw1.170.52.1 submitted_sequence shared_or_unassigned MA2381.1 18 21 - AAAG 1.000 6.935 CTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
AT1G72740 submitted_sequence shared_or_unassigned MA1353.2 28 38 + ATTTAGGGTTT 1.000 18.79 ATTTAGGGTTT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TRB1 submitted_sequence shared_or_unassigned MA2032.2 30 38 - TTAGGGTTT 1.000 15.89 AAACCCTAA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
OsTRBF3 submitted_sequence shared_or_unassigned MA2404.1 31 37 - TAGGGTT 1.000 10.56 AACCCTA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
P0510F09.23 submitted_sequence shared_or_unassigned MA1030.2 31 37 - TAGGGTT 1.000 10.55 AACCCTA JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit
TRB2 submitted_sequence shared_or_unassigned MA1355.2 28 38 - ATTTAGGGTTT 0.995 17.05 AAACCCTAATT JASPAR2024_CORE_plants_non-redundant submitted_sequence_motif_hit