Rubber Dandelion TF Binding Site Prediction
Predict candidate transcription-factor binding sites from submitted DNA sequences or 4000 bp upstream regions using TF binding motifs. Results are motif-supported computational candidates, not experimentally validated regulation.
1174motifs
45224upstream sequences
4000 bpprediction length
Candidate Binding Sites
Total candidate sites: 2758
ERF7 / MA0993.2 / AP2/ERF: 4 candidate TF genes; 2 sites
Donor TF: ERF7; confidence: high
| TF ID | Unified Gene ID | TF family | motif ID | Start | End | Strand | Matched Sequence | Normalized Score | Raw Score | Consensus | Motif Source | Evidence Tier |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
MBD2
|
TkA03G584840 |
shared_or_unassigned | MA2370.1 |
1 | 5 | - | CAGCT |
1.000 | 7.883 | AGCTG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TREE1
|
TkA03G584840 |
shared_or_unassigned | MA1801.2 |
1 | 5 | - | CAGCT |
1.000 | 7.878 | AGCTG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
PK07402.1
|
TkA03G584840 |
shared_or_unassigned | MA2063.1 |
20 | 25 | + | ACCGAC |
1.000 | 9.721 | ACCGAC |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
LEC2
|
TkA03G584840 |
shared_or_unassigned | MA0581.2 |
33 | 38 | + | CATGCA |
1.000 | 11.27 | CATGCA |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
AZF2
|
TkA03G584840 |
shared_or_unassigned | MA2373.1 |
38 | 41 | + | AGTG |
1.000 | 6.035 | AGTG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
VOZ2
|
TkA03G584840 |
shared_or_unassigned | MA2366.1 |
41 | 44 | + | GCGT |
1.000 | 7.139 | GCGT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
AT5G47660
|
TkA03G584840 |
shared_or_unassigned | MA1365.3 |
46 | 52 | - | TTTTACC |
1.000 | 13.36 | GGTAAAA |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
AZF2
|
TkA03G584840 |
shared_or_unassigned | MA2373.1 |
54 | 57 | + | AGTG |
1.000 | 6.035 | AGTG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
OsERF104
|
TkA03G584840 |
AP2/ERF | MA2402.1 |
59 | 63 | - | GCGGC |
1.000 | 7.982 | GCCGC |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
CRF3
|
TkA03G584840 |
shared_or_unassigned | MA2378.1 |
60 | 63 | - | CGGC |
1.000 | 6.677 | GCCG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
ERF069
|
TkA03G584840 |
AP2/ERF | MA0997.2 |
60 | 63 | - | CGGC |
1.000 | 6.86 | GCCG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA02G168280
TkA04G268820
TkA02G022560
TkA03G515970
|
TkA03G584840 |
AP2/ERF | MA0993.2 |
60 | 63 | - | CGGC |
1.000 | 7.03 | GCCG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
CRF3
|
TkA03G584840 |
shared_or_unassigned | MA2378.1 |
62 | 65 | + | GCCG |
1.000 | 6.677 | GCCG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
ERF069
|
TkA03G584840 |
AP2/ERF | MA0997.2 |
62 | 65 | + | GCCG |
1.000 | 6.86 | GCCG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
TkA02G168280
TkA04G268820
TkA02G022560
TkA03G515970
|
TkA03G584840 |
AP2/ERF | MA0993.2 |
62 | 65 | + | GCCG |
1.000 | 7.03 | GCCG |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
OsERF104
|
TkA03G584840 |
AP2/ERF | MA2402.1 |
62 | 66 | + | GCCGC |
1.000 | 7.982 | GCCGC |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
CAMTA2
|
TkA03G584840 |
shared_or_unassigned | MA0969.2 |
63 | 68 | + | CCGCGT |
1.000 | 9.992 | CCGCGT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
CAMTA3
|
TkA03G584840 |
shared_or_unassigned | MA0970.2 |
63 | 68 | + | CCGCGT |
1.000 | 10.37 | CCGCGT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
VOZ2
|
TkA03G584840 |
shared_or_unassigned | MA2366.1 |
65 | 68 | + | GCGT |
1.000 | 7.139 | GCGT |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |
estExt_gwp_gw1.C_220046
|
TkA03G584840 |
shared_or_unassigned | MA2385.1 |
78 | 81 | + | GCGC |
1.000 | 7.123 | GCGC |
JASPAR2024_CORE_plants_non-redundant | TK1151_4000bp_promoter_motif_hit |