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Rubber Dandelion TF Binding Site Prediction

Predict candidate transcription-factor binding sites from submitted DNA sequences or 4000 bp upstream regions using TF binding motifs. Results are motif-supported computational candidates, not experimentally validated regulation.

1174motifs
45224upstream sequences
4000 bpprediction length

Scan 4000 bp Upstream by Gene ID

Examples TkA01G000070 LXL04_000004

Scan Submitted DNA Sequence

Example CDS

Candidate Binding Sites

Input ID
TkA01G000070
Unified Gene ID
TkA01G000070
TK1151 ID
TkA01G000070
Scan Region
4000 bp; upstream 4000 bp
Threshold
0.95
Motif Source
JASPAR2024 CORE plants non-redundant

Download Current Query TSV

Total candidate sites: 2831

DOF1.8 / MA0981.2 / Dof: 18 candidate TF genes; 1 sites

Donor TF: DOF1.5;DOF1.7;DOF5.8;DOF1.3;DOF1.1;DOF1; confidence: high

TkA03G519950 TkA08G158380 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 TkA03G348550 TkA07G419940 TkA04G044830 TkA04G045600 TkA03G384240 TkA03G385860 TkA01G603240 TkA08G051130 TkA05G407520 TkA06G476300 TkA08G003540 TkA07G314540
DOF2.4 / MA0982.2 / Dof: 11 candidate TF genes; 1 sites

Donor TF: DOF3.4;DOF2.2;DOF5.4;DOF2.1;DOF4.4; confidence: high

TkA06G156760 TkA05G432650 TkA07G411300 TkA08G109250 TkA04G044830 TkA04G045600 TkA05G351190 TkA01G076090 TkA08G051130 TkA01G603240 TkA03G514870
DOF5.6 / MA0983.2 / Dof: 18 candidate TF genes; 1 sites

Donor TF: DOF5.3;DOF5.7;DOF3.6;DOF5.8;DOF5.4;DOF4.6; confidence: high

TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA04G044830 TkA04G045600 TkA08G051130 TkA05G432650 TkA06G156760 TkA07G411300 TkA08G109250 TkA02G455650 TkA05G407520 TkA06G476300 TkA08G003540 TkA03G384240 TkA03G385860 TkA03G430400
DOF5.3 / MA1071.2 / Dof: 16 candidate TF genes; 1 sites

Donor TF: DOF5.3;DOF5.7;DOF5.8;DOF1.3;DOF5.4; confidence: high

TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 TkA07G411300 TkA08G109250 TkA02G455650 TkA03G348550 TkA07G419940 TkA03G384240 TkA03G385860 TkA03G430400
DOF3.1 / MA2379.1 / Dof: 18 candidate TF genes; 1 sites

Donor TF: DOF3.4;DOF3.2;DOF3.6;DOF3.5;DOF3.7;DOF2.1;DOF1.1; confidence: high

TkA06G156760 TkA01G480580 TkA08G220950 TkA04G044830 TkA04G045600 TkA08G051130 TkA05G432650 TkA02G425120 TkA05G407520 TkA06G476300 TkA08G003540 TkA05G351190 TkA01G076090 TkA01G603240 TkA03G384240 TkA03G385860 TkA03G430400 TkA07G314540
TF ID Unified Gene ID TF family motif ID Start End Strand Matched Sequence Normalized Score Raw Score Consensus Motif Source Evidence Tier
PHYPADRAFT_153324 TkA01G000070 shared_or_unassigned MA0989.2 3 7 + AAAAG 1.000 7.885 AAAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK03929.1 TkA01G000070 shared_or_unassigned MA2058.1 3 7 - AAAAG 1.000 8.315 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK10955.1 TkA01G000070 shared_or_unassigned MA2069.1 3 7 - AAAAG 1.000 8.996 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK20317.1 TkA01G000070 shared_or_unassigned MA2081.1 3 7 - AAAAG 1.000 7.778 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK20555.1 TkA01G000070 shared_or_unassigned MA2356.1 3 7 - AAAAG 1.000 7.584 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK23009.1 TkA01G000070 shared_or_unassigned MA2084.1 3 7 - AAAAG 1.000 8.496 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK23763.1 TkA01G000070 shared_or_unassigned MA2085.1 3 7 - AAAAG 1.000 8.456 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
e_gw1.392.16.1 TkA01G000070 shared_or_unassigned MA2383.1 3 7 - AAAAG 1.000 7.901 CTTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
TkA03G519950 TkA08G158380 TkA06G156760 TkA02G499520 TkA05G347990 TkA08G106170 +12 TkA01G000070 Dof MA0981.2 4 7 + AAAG 1.000 6.587 AAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
TkA06G156760 TkA05G432650 TkA07G411300 TkA08G109250 TkA04G044830 TkA04G045600 +5 TkA01G000070 Dof MA0982.2 4 7 + AAAG 1.000 6.397 AAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
TkA06G156760 TkA01G480580 TkA08G220950 TkA04G044830 TkA04G045600 TkA08G051130 +12 TkA01G000070 Dof MA2379.1 4 7 - AAAG 1.000 6.022 CTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA06G156760 TkA02G499520 +10 TkA01G000070 Dof MA1071.2 4 7 + AAAG 1.000 6.42 AAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
TkA01G480580 TkA08G220950 TkA06G097690 TkA03G169860 TkA04G044830 TkA04G045600 +12 TkA01G000070 Dof MA0983.2 4 7 + AAAG 1.000 6.936 AAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PHYPADRAFT_140773 TkA01G000070 shared_or_unassigned MA0987.2 4 7 + AAAG 1.000 6.923 AAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PHYPADRAFT_38837 TkA01G000070 shared_or_unassigned MA1022.2 4 7 + AAAG 1.000 6.646 AAAG JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK01144.1 TkA01G000070 shared_or_unassigned MA2056.1 4 7 - AAAG 1.000 7.388 CTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK07031.1 TkA01G000070 shared_or_unassigned MA2062.1 4 7 - AAAG 1.000 6.74 CTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK15337.1 TkA01G000070 shared_or_unassigned MA2070.1 4 7 - AAAG 1.000 6.865 CTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PK16340.1 TkA01G000070 shared_or_unassigned MA2073.1 4 7 - AAAG 1.000 6.621 CTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit
PpDof6 TkA01G000070 Dof MA2394.1 4 7 - AAAG 1.000 6.655 CTTT JASPAR2024_CORE_plants_non-redundant TK1151_4000bp_promoter_motif_hit