Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00348

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 33

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00348

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00348 Chr08 40514008-41341900 Chr07 17712057-18574642 mixed High 33 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00348`	Chr08:40514008-41341900	Chr07:17712057-18574642	mixed	33	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 33 · Showing 1–33 · Page 1/1

Download All Anchors TSV

TkA08G155140 → LXL04_032203

100.0%

TkA08G155190 → LXL04_032201

100.0%

TkA08G155230 → LXL04_032199

96.3%

TkA08G155270 → LXL04_032197

95.4%

TkA08G155280 → LXL04_032196

98.7%

TkA08G155290 → LXL04_032195

93.2%

TkA08G155310 → LXL04_032194

98.2%

TkA08G155460 → LXL04_032191

98.9%

TkA08G155470 → LXL04_032191

96.7%

TkA08G155490 → LXL04_032191

75.4%

TkA08G155500 → LXL04_032190

82.8%

TkA08G156170 → LXL04_032186

99.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA08G155140`	`LXL04_032203`	`JCVI_TKOH_00348`	100.0	100.0 / 100.0	Strict
`TkA08G155190`	`LXL04_032201`	`JCVI_TKOH_00348`	100.0	100.0 / 100.0	Complex
`TkA08G155230`	`LXL04_032199`	`JCVI_TKOH_00348`	96.3	98.956 / 74.899	Probable
`TkA08G155270`	`LXL04_032197`	`JCVI_TKOH_00348`	95.4	100.0 / 100.0	Strict
`TkA08G155280`	`LXL04_032196`	`JCVI_TKOH_00348`	98.7	66.957 / 27.599	Complex
`TkA08G155290`	`LXL04_032195`	`JCVI_TKOH_00348`	93.2	100.0 / 100.0	Probable
`TkA08G155310`	`LXL04_032194`	`JCVI_TKOH_00348`	98.2	98.049 / 92.769	Strict
`TkA08G155460`	`LXL04_032191`	`JCVI_TKOH_00348`	98.9	72.981 / 23.33	Complex
`TkA08G155470`	`LXL04_032191`	`JCVI_TKOH_00348`	96.7	99.577 / 42.921	Review
`TkA08G155490`	`LXL04_032191`	`JCVI_TKOH_00348`	75.4	98.78 / 14.248	Complex
`TkA08G155500`	`LXL04_032190`	`JCVI_TKOH_00348`	82.8	100.0 / 48.052	Complex
`TkA08G156170`	`LXL04_032186`	`JCVI_TKOH_00348`	99.0	100.0 / 100.0	Review
`TkA08G156180`	`LXL04_032187`	`JCVI_TKOH_00348`	99.8	100.0 / 100.0	Complex
`TkA08G156820`	`LXL04_032187`	`JCVI_TKOH_00348`	100.0	92.898 / 60.444	Complex
`TkA08G158030`	`LXL04_032183`	`JCVI_TKOH_00348`	99.6	100.0 / 100.0	Strict
`TkA08G158040`	`LXL04_032182`	`JCVI_TKOH_00348`	100.0	100.0 / 100.0	Complex
`TkA08G158060`	`LXL04_032181`	`JCVI_TKOH_00348`	95.1	93.252 / 99.01	Strict
`TkA08G158150`	`LXL04_032180`	`JCVI_TKOH_00348`	97.8	98.358 / 94.052	Review
`TkA08G158160`	`LXL04_032175`	`JCVI_TKOH_00348`	96.4	99.412 / 11.575	Review
`TkA08G158290`	`LXL04_032178`	`JCVI_TKOH_00348`	99.4	100.0 / 100.0	Complex
`TkA08G158380`	`LXL04_032177`	`JCVI_TKOH_00348`	91.0	100.0 / 93.778	Probable
`TkA08G158400`	`LXL04_032176`	`JCVI_TKOH_00348`	96.5	93.281 / 100.0	Complex
`TkA08G158410`	`LXL04_032175`	`JCVI_TKOH_00348`	99.7	97.706 / 64.178	Complex
`TkA08G158420`	`LXL04_032174`	`JCVI_TKOH_00348`	100.0	100.0 / 100.0	Complex
`TkA08G158470`	`LXL04_032173`	`JCVI_TKOH_00348`	98.8	100.0 / 100.0	Strict
`TkA08G158480`	`LXL04_032172`	`JCVI_TKOH_00348`	100.0	100.0 / 96.552	Review
`TkA08G158510`	`LXL04_032171`	`JCVI_TKOH_00348`	100.0	94.737 / 29.439	Review
`TkA08G158520`	`LXL04_032170`	`JCVI_TKOH_00348`	100.0	100.0 / 90.023	Complex
`TkA08G158530`	`LXL04_032169`	`JCVI_TKOH_00348`	99.0	100.0 / 100.0	Strict
`TkA08G158620`	`LXL04_032168`	`JCVI_TKOH_00348`	95.0	100.0 / 100.0	Strict
`TkA08G158700`	`LXL04_032167`	`JCVI_TKOH_00348`	100.0	100.0 / 91.489	Strict
`TkA08G158730`	`LXL04_032166`	`JCVI_TKOH_00348`	98.2	99.407 / 44.226	Review
`TkA08G158800`	`LXL04_032164`	`JCVI_TKOH_00348`	99.0	98.98 / 88.342	Strict