Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00342
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 18
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00342The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00342 |
Chr08:193552-931138 | Chr06:77122-517736 | mixed | 18 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 18 · Showing 1–18 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA08G000790 | LXL04_026615 | JCVI_TKOH_00342 | 87.4 | 97.376 / 61.812 | Complex |
TkA08G000810 | LXL04_026616 | JCVI_TKOH_00342 | 90.7 | 100.0 / 100.0 | Complex |
TkA08G000840 | LXL04_026618 | JCVI_TKOH_00342 | 92.9 | 99.091 / 98.045 | Complex |
TkA08G001290 | LXL04_026624 | JCVI_TKOH_00342 | 95.5 | 100.0 / 100.0 | Complex |
TkA08G001330 | LXL04_026625 | JCVI_TKOH_00342 | 100.0 | 99.367 / 25.993 | Review |
TkA08G001440 | LXL04_026626 | JCVI_TKOH_00342 | 92.0 | 99.107 / 21.58 | Complex |
TkA08G001790 | LXL04_026615 | JCVI_TKOH_00342 | 99.8 | 98.282 / 83.333 | Complex |
TkA08G001800 | LXL04_026616 | JCVI_TKOH_00342 | 83.6 | 93.714 / 58.383 | Complex |
TkA08G001830 | LXL04_026618 | JCVI_TKOH_00342 | 92.9 | 60.967 / 98.324 | Complex |
TkA08G001950 | LXL04_026620 | JCVI_TKOH_00342 | 98.4 | 100.0 / 83.673 | Review |
TkA08G002190 | LXL04_026624 | JCVI_TKOH_00342 | 93.7 | 100.0 / 100.0 | Complex |
TkA08G002220 | LXL04_026625 | JCVI_TKOH_00342 | 100.0 | 100.0 / 100.0 | Probable |
TkA08G002400 | LXL04_026626 | JCVI_TKOH_00342 | 99.8 | 100.0 / 100.0 | Probable |
TkA08G003550 | LXL04_026634 | JCVI_TKOH_00342 | 100.0 | 100.0 / 100.0 | Complex |
TkA08G003570 | LXL04_026630 | JCVI_TKOH_00342 | 78.8 | 52.091 / 88.462 | Review |
TkA08G003580 | LXL04_026632 | JCVI_TKOH_00342 | 99.8 | 100.0 / 100.0 | Probable |
TkA08G003600 | LXL04_026629 | JCVI_TKOH_00342 | 99.6 | 100.0 / 100.0 | Complex |
TkA08G003610 | LXL04_026628 | JCVI_TKOH_00342 | 93.4 | 100.0 / 100.0 | Complex |