Supplementary Data and Software Sources
RubberDandelionOmics | English publication edition v02 | 2026-10-03
Five supplementary tables document data resources, individual samples and raw-read downloads, software and databases, website-derived data and file integrity, and references. All 538 records from the preceding source inventory are retained, including 121 RNA-seq runs (109 used for uniform-v4 quantification), 129 resequencing runs and 52 deduplicated references.
Five historical initial-input checksums were not recorded. Current retained-file SHA256 values are listed separately and cannot reconstruct historical file identity. Unconfirmed publication links, unavailable revisions and unpublished inputs remain explicitly qualified. Cross-species evidence and computational predictions do not establish experimental validation in Taraxacum kok-saghyz. Blank category-specific fields are not applicable or were not supplied in the retained source record; material uncertainties are described explicitly.
S1 Data Resources
Download table TSV | Back to contents
| Category | Resource ID | Resource name | Species | Accession | BioProject | File or subresource | Source URL | Original download URL | Website use | Reference ID | Paper title | Publication year | DOI | Paper URL | Paper relationship | Verification basis | Limitations | Historical catalogue ID | Included runs | Uniform-v4 runs | Species verification | Mirror URL | Species code | Evidence type | Material or scope | Evidence boundary |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Reference genome | REF_TK1151 | TK1151 / GWHBCHF00000000 | Taraxacum kok-saghyz | GWHBCHF00000000 | PRJCA005187 | Dna | https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.genome.fasta.gz | Primary reference, formal gene IDs, genome annotation and sequences, and uniform-model coordinates | REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TK1151 | TK1151 / GWHBCHF00000000 | Taraxacum kok-saghyz | GWHBCHF00000000 | PRJCA005187 | Gff | https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.gff.gz | Primary reference, formal gene IDs, genome annotation and sequences, and uniform-model coordinates | REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TK1151 | TK1151 / GWHBCHF00000000 | Taraxacum kok-saghyz | GWHBCHF00000000 | PRJCA005187 | Rna | https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.RNA.fasta.gz | Primary reference, formal gene IDs, genome annotation and sequences, and uniform-model coordinates | REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TK1151 | TK1151 / GWHBCHF00000000 | Taraxacum kok-saghyz | GWHBCHF00000000 | PRJCA005187 | Cds | https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.CDS.fasta.gz | Primary reference, formal gene IDs, genome annotation and sequences, and uniform-model coordinates | REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TK1151 | TK1151 / GWHBCHF00000000 | Taraxacum kok-saghyz | GWHBCHF00000000 | PRJCA005187 | Protein | https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.Protein.faa.gz | Primary reference, formal gene IDs, genome annotation and sequences, and uniform-model coordinates | REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TK1151 | TK1151 / GWHBCHF00000000 | Taraxacum kok-saghyz | GWHBCHF00000000 | PRJCA005187 | Feature | https://ngdc.cncb.ac.cn/gwh/Assembly/19732/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_Tao_Lin_GWHBCHF00000000/GWHBCHF00000000.feature.gz | Primary reference, formal gene IDs, genome annotation and sequences, and uniform-model coordinates | REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | GCA_047496595.1_OSU_TarKok_2.0_cds_from_genomic.fna.gz | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/GCA_047496595.1_OSU_TarKok_2.0_cds_from_genomic.fna.gz | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | GCA_047496595.1_OSU_TarKok_2.0_genomic.fna.gz | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/GCA_047496595.1_OSU_TarKok_2.0_genomic.fna.gz | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | GCA_047496595.1_OSU_TarKok_2.0_genomic.gff.gz | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/GCA_047496595.1_OSU_TarKok_2.0_genomic.gff.gz | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | GCA_047496595.1_OSU_TarKok_2.0_protein.faa.gz | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/GCA_047496595.1_OSU_TarKok_2.0_protein.faa.gz | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | GCA_047496595.1_OSU_TarKok_2.0_rna_from_genomic.fna.gz | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/GCA_047496595.1_OSU_TarKok_2.0_rna_from_genomic.fna.gz | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | GCA_047496595.1_OSU_TarKok_2.0_translated_cds.faa.gz | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/GCA_047496595.1_OSU_TarKok_2.0_translated_cds.faa.gz | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_OH1004 | OH-1004 / OSU_TarKok_2.0 | Taraxacum kok-saghyz | GCA_047496595.1 | PRJNA792143 | md5checksums.txt | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/047/496/595/GCA_047496595.1_OSU_TarKok_2.0/md5checksums.txt | Independent reference for historical expression and homology mapping | No explicitly associated publication identified | Original resource; no explicitly associated publication identified for OH-1004 | Official accession records and download listings checked on 2026-10-03 | USDA Ag Data Commons provides Ohio State University dataset citation and PRJNA792143, not a publication DOI. NCBI assembly directory exists with genome/GFF/CDS/protein/RNA and official md5checksums.txt. Do not attach a later paper merely using OSU_TarKok_2.0 (e.g. Gerbera paper dsag002). Year refers to dataset release, not a journal article. The dataset itself does not have a DOI; handle https://hdl.handle.net/10113/AF28516412. | |||||||||||||
| Reference genome | REF_TKS_2017 | TKS / GWHAAAA00000000 | Taraxacum kok-saghyz | GWHAAAA00000000 | PRJCA000437 | Dna | https://ngdc.cncb.ac.cn/gwh/Assembly/1/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.genome.fasta.gz | Historical gene-ID bridging and literature evidence; kept separate from current reference models | REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TKS_2017 | TKS / GWHAAAA00000000 | Taraxacum kok-saghyz | GWHAAAA00000000 | PRJCA000437 | Gff | https://ngdc.cncb.ac.cn/gwh/Assembly/1/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.gff.gz | Historical gene-ID bridging and literature evidence; kept separate from current reference models | REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TKS_2017 | TKS / GWHAAAA00000000 | Taraxacum kok-saghyz | GWHAAAA00000000 | PRJCA000437 | Rna | https://ngdc.cncb.ac.cn/gwh/Assembly/1/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.RNA.fasta.gz | Historical gene-ID bridging and literature evidence; kept separate from current reference models | REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TKS_2017 | TKS / GWHAAAA00000000 | Taraxacum kok-saghyz | GWHAAAA00000000 | PRJCA000437 | Cds | https://ngdc.cncb.ac.cn/gwh/Assembly/1/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.CDS.fasta.gz | Historical gene-ID bridging and literature evidence; kept separate from current reference models | REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TKS_2017 | TKS / GWHAAAA00000000 | Taraxacum kok-saghyz | GWHAAAA00000000 | PRJCA000437 | Protein | https://ngdc.cncb.ac.cn/gwh/Assembly/1/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.Protein.faa.gz | Historical gene-ID bridging and literature evidence; kept separate from current reference models | REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Reference genome | REF_TKS_2017 | TKS / GWHAAAA00000000 | Taraxacum kok-saghyz | GWHAAAA00000000 | PRJCA000437 | Feature | https://ngdc.cncb.ac.cn/gwh/Assembly/1/show | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.feature.gz | Historical gene-ID bridging and literature evidence; kept separate from current reference models | REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | Official accession records and download listings checked on 2026-10-03 | Repository API explicitly links accession to this DOI; use formal volume year, distinguish earlier online year. Direct files are repository-provided; no bulk genome download was required. | |||||||||
| Transcriptome project | PRJDB36270 | Developing ovaries RNA-Seq of sexual and apomixis dandelion plants (PRJCA027669) | https://www.ncbi.nlm.nih.gov/bioproject/PRJDB36270 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJDB36270 | No explicitly associated publication identified | not_found_in_checked_primary_records | NCBI explicitly cross-links NGDC PRJCA027669. NGDC retrieval failed with RemoteDisconnected; NCBI project contains no publication link. No paper assigned. | PRJDB36270 | 9 | 9 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJDB36270 | ||||||||||||||
| Transcriptome project | PRJNA1262623 | Taraxacum kok-saghyz Transcriptome or Gene expression | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1262623 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA1262623 | REF003 | Geranyl Diphosphate Synthases GDS 1 and GDS7 Facilitate Natural Rubber Biosynthesis in Taraxacum kok-saghyz Roots | 2025 | 10.3390/plants14192980 | https://www.mdpi.com/2223-7747/14/19/2980 | verified_article_reuse_accession_origin_not_established | Article section 4.8 explicitly reuses PRJNA1262623 and cites a previous dataset. This establishes article use, not that the article originally generated all runs. | PRJNA1262623 | 15 | 15 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA1262623 | ||||||||||
| Transcriptome project | PRJNA1490093 | Transcriptome Analysis of Taraxacum kok-saghyz under Salt Stress | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1490093 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA1490093 | No explicitly associated publication identified | not_found_in_checked_primary_records | NCBI BioProject record checked on 2026-10-03. No publication assigned by topic alone. | PRJNA1490093 | 15 | 15 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA1490093 | ||||||||||||||
| Transcriptome project | PRJNA361575 | Taraxacum kok-saghyz Raw sequence reads | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA361575 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA361575 | REF004 | Analysis of the first Taraxacum kok-saghyz transcriptome reveals potential rubber yield related SNPs | 2017 | 10.1038/s41598-017-09034-2 | https://pmc.ncbi.nlm.nih.gov/articles/PMC5577190/ | verified_article_run_accession_to_bioproject | Article explicitly lists SRR5181661-SRR5181665 and SRR5181667. NCBI SRA SRR5181661 belongs to PRJNA361575; linkage is run-level, not a title-only match. | PRJNA361575 | 6 | 6 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA361575 | ||||||||||
| Transcriptome project | PRJNA413689 | Identification of gene functions in different accessions. | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA413689 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413689 | REF005 | Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants | 2018 | 10.1186/s12864-018-5287-4 | https://pmc.ncbi.nlm.nih.gov/articles/PMC6280347/ | verified_bioproject_publication_and_article_accession | NCBI BioProject lists this publication; article Data Availability explicitly states PRJNA413689. | PRJNA413689 | 3 | 3 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA413689 | ||||||||||
| Transcriptome project | PRJNA539838 | Transcriptome of Taraxacum kok-saghyz Rodin roots from different developmental stages | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA539838 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA539838 | REF006 | Genome-Wide Identification and Characterization of the HMGR Gene Family in Taraxacum kok-saghyz Provide Insights into Its Regulation in Response to Ethylene and Methyl Jsamonate Treatments | 2024 | 10.3390/plants13182646 | https://pmc.ncbi.nlm.nih.gov/articles/PMC11435204/ | verified_article_reuse_accession_origin_not_established | Article section 4.6 explicitly reuses PRJNA539838. Original developmental-root RNA-seq publication remains unresolved; candidate original study recorded separately. | PRJNA539838 | 16 | 16 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA539838 | ||||||||||
| Transcriptome project | PRJNA681093 | Chrysanthemum lavandulifolium cultivar:G1 Nanopore sequencing data | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA681093 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA681093 | REF007 | The Chrysanthemum lavandulifolium genome and the molecular mechanism underlying diverse capitulum types | 2022 | 10.1093/hr/uhab022 | https://academic.oup.com/hr/article/doi/10.1093/hr/uhab022/6510191 | verified_bioproject_publication_and_article_accession | Project primary organism is Chrysanthemum lavandulifolium; website-used run SRR15099898 is explicitly Taraxacum kok-saghyz and belongs to PRJNA681093, confirmed by NCBI SRA. Project includes Asteraceae comparative RNA-seq. Do not label all project runs as T. kok-saghyz. | PRJNA681093 | 12 | 0 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA681093 | ||||||||||
| Transcriptome project | PRJNA745038 | Taraxacum kok-saghyz Raw sequence reads | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA745038 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA745038 | REF008 | Transcriptome analysis of Taraxacum kok-saghyz reveals the role of exogenous methyl jasmonate in regulating rubber biosynthesis and drought tolerance | 2023 | 10.1016/j.gene.2023.147346 | https://pubmed.ncbi.nlm.nih.gov/36898514/ | candidate_article_metadata_verified_accession_link_not_verified | Historical website manifest assigns this DOI, and NCBI project/abstract match MeJA laticifer study, but checked primary records do not expose an explicit accession-paper linkage. Publisher full text is access-limited. Do not present linkage as confirmed. | PRJNA745038 | 9 | 9 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA745038 | ||||||||||
| Transcriptome project | PRJNA827459 | Taraxacum kok-saghyz Transcriptome or Gene expression | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA827459 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA827459 | REF009 | Metabolic and Transcriptomic Analyses Reveal the Effects of Ethephon on Taraxacum kok-saghyz Rodin | 2022 | 10.3390/molecules27113548 | https://pmc.ncbi.nlm.nih.gov/articles/PMC9182187/ | verified_article_accession | Article Data Availability explicitly links PRJNA827459; PMID checked in downloaded actual article. | PRJNA827459 | 15 | 15 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA827459 | ||||||||||
| Transcriptome project | PRJNA918839 | Taraxacum kok-saghyz latex RNA-seq by foliar application of lysophosphatidylethanolamine | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA918839 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA918839 | REF010 | Enhanced natural rubber production in rubber dandelion Taraxacum kok-saghyz roots by foliar application of a natural lipid | 2024 | 10.1016/j.indcrop.2023.117714 | https://www.sciencedirect.com/science/article/pii/S0926669023014796 | candidate_article_metadata_verified_accession_link_not_verified | Publisher abstract and NCBI project both concern lysophosphatidylethanolamine-treated TKS latex; explicit PRJNA918839 linkage not found in accessible records. Title/DOI metadata verified; project-paper association remains candidate. | PRJNA918839 | 6 | 6 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA918839 | ||||||||||
| Transcriptome project | PRJNA931633 | Taraxacum kok-saghyz Raw sequence reads | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA931633 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA931633 | No explicitly associated publication identified | not_found_in_checked_primary_records | NCBI BioProject record checked on 2026-10-03. No publication assigned by topic alone. | PRJNA931633 | 9 | 9 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA931633 | ||||||||||||||
| Transcriptome project | PRJNA985648 | RNA-Seq of Taraxacum koksagyhz PEL-like overexpression line vs. near-isogenic line | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA985648 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA985648 | REF011 | Overexpression of a pseudo-etiolated-in-light-like protein in Taraxacum koksaghyz leads to a pale green phenotype and enables transcriptome-based network analysis of photomorphogenesis and isoprenoid biosynthesis | 2023 | 10.3389/fpls.2023.1228961 | https://pmc.ncbi.nlm.nih.gov/articles/PMC10569127/ | verified_article_accession | Article Data Availability explicitly links PRJNA985648. | PRJNA985648 | 2 | 2 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJNA985648 | ||||||||||
| Transcriptome project | PRJDB37370 | The effects of MeOH on TKS growth and rubber production (KAP241469) | https://www.ncbi.nlm.nih.gov/bioproject/PRJDB37370 | https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJDB37370 | No explicitly associated publication identified | not_found_in_checked_primary_records | Original local RunInfo BioProject field was blank. All four actual DRR records now explicitly link PRJDB37370/DRP016186. No invented BioProject. Sample labels must use verified MeOH/control records rather than previously inferred control labels. | DRA_unassigned_DRR | 4 | 4 | Included runs verified as Taraxacum kok-saghyz; the umbrella PRJNA681093 project is Chrysanthemum, requiring run-level verification | https://www.ebi.ac.uk/ena/browser/view/PRJDB37370 | ||||||||||||||
| Other omics or author-supplied data | PUB_TRANSCRIPTOME_PRJNA413689 | Public RNA-seq project | PRJNA413689 | publisher_supplement_xlsx | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA413689 | https://media.springernature.com/original/springer-static/esm/art%3A10.1186%2Fs12864-018-5287-4/MediaObjects/12864_2018_5287_MOESM1_ESM.xlsx | Author-reported public resource, separate from website-computed results | REF005 | Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants | 2018 | 10.1186/s12864-018-5287-4 | https://doi.org/10.1186/s12864-018-5287-4 | Original data or author-supplied supplementary material publication | Publisher Data Availability explicitly names PRJNA413689; TSA GFZW00000000 and TksCPT3 MG209739 are distinct related accessions. | ||||||||||||
| Other omics or author-supplied data | PUB_TRANSCRIPTOME_S7 | Author-reported contig-level HR/LR/Y11 RPKM matrix, original article Table S7 | PMID30514210:Table S7 | publisher_supplement_xlsx | https://link.springer.com/article/10.1186/s12864-018-5287-4#MOESM1 | https://media.springernature.com/original/springer-static/esm/art%3A10.1186%2Fs12864-018-5287-4/MediaObjects/12864_2018_5287_MOESM1_ESM.xlsx | Import of author-supplied supplementary matrices with the original contig namespace retained; not formal gene-level quantification | REF005 | Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants | 2018 | 10.1186/s12864-018-5287-4 | https://doi.org/10.1186/s12864-018-5287-4 | Original data or author-supplied supplementary material publication | Table S7 contains expression levels of assembled contigs; supplement workbook is publisher source; does not itself establish TK1151/OH-1004 gene ID correspondence. | ||||||||||||
| Other omics or author-supplied data | PUB_TRANSCRIPTOME_S8 | Author-reported differential expression results, original article Table S8 | PMID30514210:Table S8 | publisher_supplement_xlsx | https://link.springer.com/article/10.1186/s12864-018-5287-4#MOESM1 | https://media.springernature.com/original/springer-static/esm/art%3A10.1186%2Fs12864-018-5287-4/MediaObjects/12864_2018_5287_MOESM1_ESM.xlsx | Import of author-supplied supplementary matrices with the original contig namespace retained; not formal gene-level quantification | REF005 | Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants | 2018 | 10.1186/s12864-018-5287-4 | https://doi.org/10.1186/s12864-018-5287-4 | Original data or author-supplied supplementary material publication | Table S8 contains differential expression genes in original paper; original study results, not website rerun statistics. | ||||||||||||
| Other omics or author-supplied data | PUB_PROTEOME_PXD011773 | Author-processed MaxQuant outputs imported as proteomic evidence | PXD011773 | original_ftp | https://www.ebi.ac.uk/pride/archive/projects/PXD011773 | ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD011773 | Import of author-processed results; MaxQuant was not rerun by the website | REF012 | Comparative proteome and metabolome analyses of latex-exuding and non-exuding Taraxacum koksaghyz roots provide insights into laticifer biology | 2020 | 10.1093/jxb/erz512 | https://doi.org/10.1093/jxb/erz512 | Original data or author-supplied supplementary material publication | PRIDE API references DOI erz512 and PubMed 31740929 explicitly. Repository title differs from paper title. PRIDE processing protocol explicitly used MaxQuant 1.5.2.8 with Andromeda and dandelion Lin 2017 sequence database; this is the original study pipeline, not proof that website reran MaxQuant. Official FTP path recorded by ProteomeXchange; HTTPS archive directory HEAD access check returned 200. | ||||||||||||
| Other omics or author-supplied data | PUB_PROTEOME_PXD011773 | Author-processed MaxQuant outputs imported as proteomic evidence | PXD011773 | pride_repository | https://www.ebi.ac.uk/pride/archive/projects/PXD011773 | https://www.ebi.ac.uk/pride/archive/projects/PXD011773 | Import of author-processed results; MaxQuant was not rerun by the website | REF012 | Comparative proteome and metabolome analyses of latex-exuding and non-exuding Taraxacum koksaghyz roots provide insights into laticifer biology | 2020 | 10.1093/jxb/erz512 | https://doi.org/10.1093/jxb/erz512 | Original data or author-supplied supplementary material publication | PRIDE API references DOI erz512 and PubMed 31740929 explicitly. Repository title differs from paper title. PRIDE processing protocol explicitly used MaxQuant 1.5.2.8 with Andromeda and dandelion Lin 2017 sequence database; this is the original study pipeline, not proof that website reran MaxQuant. Official FTP path recorded by ProteomeXchange; HTTPS archive directory HEAD access check returned 200. | ||||||||||||
| Other omics or author-supplied data | PUB_WGR_CRA009020 | Whole-genome resequencing raw reads from 129 samples | CRA009020 | publisher_supplement_xlsx | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020 | https://media.springernature.com/original/springer-static/esm/art%3A10.1186%2Fs12864-022-09105-3/MediaObjects/12864_2022_9105_MOESM2_ESM.xlsx | GSA raw reads realigned to two references for variant calling | REF013 | Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin | 2023 | 10.1186/s12864-022-09105-3 | https://doi.org/10.1186/s12864-022-09105-3 | Original data or author-supplied supplementary material publication | Publisher data availability explicitly names CRA009020 for WGR raw reads. Population: 127 F1 offspring and two parents (166 and X51). GSA page fetch failed due transient proxy interruption; raw-run download links not invented. | ||||||||||||
| Other omics or author-supplied data | PUB_VARIANTS_GVM000440 | Author-deposited variants, separate from website realignment and variant calling | GVM000440 | publisher_supplement_xlsx | https://ngdc.cncb.ac.cn/gvm/getProjectDetail?project=GVM000440 | https://media.springernature.com/original/springer-static/esm/art%3A10.1186%2Fs12864-022-09105-3/MediaObjects/12864_2022_9105_MOESM2_ESM.xlsx | Author-reported public resource, separate from website-computed results | REF013 | Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin | 2023 | 10.1186/s12864-022-09105-3 | https://doi.org/10.1186/s12864-022-09105-3 | Original data or author-supplied supplementary material publication | Publisher Data Availability names GVM000440; current GVM repository supplies genotype CSV and diff_parent_SNP_info.xlsx links. Not an unrelated association panel. | ||||||||||||
| Other omics or author-supplied data | PUB_VARIANTS_GVM000440 | Author-deposited variants, separate from website realignment and variant calling | GVM000440 | SNP_matrix_final.genotype.csv | https://ngdc.cncb.ac.cn/gvm/getProjectDetail?project=GVM000440 | http://download.big.ac.cn/GVM/Taraxacum_kok-saghyz/GVM000440/SNP_matrix_final.genotype.csv | Author-reported public resource, separate from website-computed results | REF013 | Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin | 2023 | 10.1186/s12864-022-09105-3 | https://doi.org/10.1186/s12864-022-09105-3 | Original data or author-supplied supplementary material publication | Publisher Data Availability names GVM000440; current GVM repository supplies genotype CSV and diff_parent_SNP_info.xlsx links. Not an unrelated association panel. | ||||||||||||
| Other omics or author-supplied data | PUB_VARIANTS_GVM000440 | Author-deposited variants, separate from website realignment and variant calling | GVM000440 | diff_parent_SNP_info.xlsx | https://ngdc.cncb.ac.cn/gvm/getProjectDetail?project=GVM000440 | http://download.big.ac.cn/GVM/Taraxacum_kok-saghyz/GVM000440/diff_parent_SNP_info.xlsx | Author-reported public resource, separate from website-computed results | REF013 | Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin | 2023 | 10.1186/s12864-022-09105-3 | https://doi.org/10.1186/s12864-022-09105-3 | Original data or author-supplied supplementary material publication | Publisher Data Availability names GVM000440; current GVM repository supplies genotype CSV and diff_parent_SNP_info.xlsx links. Not an unrelated association panel. | ||||||||||||
| Other omics or author-supplied data | PUB_QTL_PHENOTYPE_SUPPLEMENT | Author-supplied phenotype and QTL supplementary tables | 10.1186/s12864-022-09105-3:Additional file 2 | publisher_supplement_xlsx | https://link.springer.com/article/10.1186/s12864-022-09105-3#MOESM2 | https://media.springernature.com/original/springer-static/esm/art%3A10.1186%2Fs12864-022-09105-3/MediaObjects/12864_2022_9105_MOESM2_ESM.xlsx | Author-reported public resource, separate from website-computed results | REF013 | Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin | 2023 | 10.1186/s12864-022-09105-3 | https://doi.org/10.1186/s12864-022-09105-3 | Original data or author-supplied supplementary material publication | Supplement publisher metadata describes resequencing, bin-marker coordinates, genotypes, QTL gene regions, QTL genetic effects and QTL genotypes. Per-individual phenotype availability has not been checked inside workbook; do not label this entire file a complete raw phenotype matrix. | ||||||||||||
| Other omics or author-supplied data | OWN_TKS_TISSUE_FPKM_202609 | In-house bred Zhaosu line: FPKM for 24 samples from eight tissues | Not deposited in a public repository | tissue_fpkm_original.xlsx (user-supplied original workbook) | User-provided research data | http://47.95.224.165/rubber/tissue-expression/files/matrix | Import of the user-provided matrix with TK1151 ID checks; no public raw-read deposition claimed | No explicitly associated publication identified | Unpublished or no associated publication supplied | The website provides the user-supplied workbook. No public upstream raw-read accession, associated publication, or processing-software version has been supplied | ||||||||||||||||
| Cross-species literature evidence | HB_HRT1_ELIFE_2016 | BAB71776.2;AB061234.3;LC057267 | https://doi.org/10.7554/eLife.19022 | REF041 | Identification and reconstitution of the rubber biosynthetic machinery on rubber particles from Hevea brasiliensis | 2016 | 10.7554/eLife.19022 | https://doi.org/10.7554/eLife.19022 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | HB | direct functional experiment | Rubber particles | |||||||||||||
| Cross-species literature evidence | HB_CPT_2003 | AB061234.3;AB064661.2 | https://doi.org/10.1046/j.1432-1033.2003.03863.x | REF042 | Molecular cloning, expression and characterization of cDNA encoding cis ‐prenyltransferases from Hevea brasiliensis | 2003 | 10.1046/j.1432-1033.2003.03863.x | https://doi.org/10.1046/j.1432-1033.2003.03863.x | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | HB | enzyme experiment | Latex and recombinant enzyme | |||||||||||||
| Cross-species literature evidence | HB_GEO_LATEX_2018 | GSE101568;PRJNA394848;SRP112717 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101568 | No explicitly associated publication identified | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101568 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | HB | RNA-seq processed-result source | 21 latex samples healthy and tapping panel dryness or ethephon conditions | ||||||||||||||||
| Cross-species literature evidence | PA_CPT_CBP_2019 | MF688933;MF688934;MF688936;MF688938;SRP107961 | https://pmc.ncbi.nlm.nih.gov/articles/PMC6397875/ | REF043 | Molecular Studies of the Protein Complexes Involving Cis-Prenyltransferase in Guayule (Parthenium argentatum), an Alternative Rubber-Producing Plant | 2019 | 10.3389/fpls.2019.00165 | https://doi.org/10.3389/fpls.2019.00165 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | PA | direct functional experiment | PI478663 and heterologous systems | |||||||||||||
| Cross-species literature evidence | PA_CPT_CBP_2022 | MF688933;MF688934;MF688936;MF688938 | https://pmc.ncbi.nlm.nih.gov/articles/PMC8904820/ | REF044 | Reconstitution of prenyltransferase activity on nanodiscs by components of the rubber synthesis machinery of the Para rubber tree and guayule | 2022 | 10.1038/s41598-022-07564-y | https://doi.org/10.1038/s41598-022-07564-y | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | PA | direct functional experiment | Cell-free nanodisc reconstruction | |||||||||||||
| Cross-species literature evidence | PA_AOS_2019 | X78166.2 | https://pmc.ncbi.nlm.nih.gov/articles/PMC6607968/ | REF045 | Downregulation of a CYP74 Rubber Particle Protein Increases Natural Rubber Production in Parthenium argentatum | 2019 | 10.3389/fpls.2019.00760 | https://doi.org/10.3389/fpls.2019.00760 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | PA | direct genetic experiment | AOS RNAi and overexpression plants | |||||||||||||
| Cross-species literature evidence | PA_DROUGHT_2021 | PRJNA400611 | https://pmc.ncbi.nlm.nih.gov/articles/PMC8566568/ | REF046 | RNASeq analysis of drought-stressed guayule reveals the role of gene transcription for modulating rubber, resin, and carbohydrate synthesis | 2021 | 10.1038/s41598-021-01026-7 | https://doi.org/10.1038/s41598-021-01026-7 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | PA | RNA-seq processed-result source | AZ-3 field bark under well-watered and drought conditions | |||||||||||||
| Cross-species literature evidence | PA_COLD_2019 | PRJNA387289;GFTW000000000.1 | https://pmc.ncbi.nlm.nih.gov/articles/PMC6373111/ | REF047 | Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray) | 2019 | 10.1186/s12870-019-1669-2 | https://doi.org/10.1186/s12870-019-1669-2 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | PA | RNA-seq processed-result source | Stem and leaf under summer or winter simulation | |||||||||||||
| Cross-species literature evidence | PA_SRPP_PROMOTER_2025 | PV754023.1 | https://pmc.ncbi.nlm.nih.gov/articles/PMC12406399/ | REF048 | Characterization of Small Rubber Particle Protein 1 promoter from guayule (Parthenium argentatum) | 2025 | 10.1186/s13104-025-07448-0 | https://doi.org/10.1186/s13104-025-07448-0 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | PA | promoter experiment | SRPP1 promoter reporter assay | |||||||||||||
| Cross-species literature evidence | TB_CPT_2012 | JQ991925.1;JQ991926.1;JQ991927.1 | https://doi.org/10.1104/pp.111.187880 | REF049 | Laticifer-Specific cis-Prenyltransferase Silencing Affects the Rubber, Triterpene, and Inulin Content of Taraxacum brevicorniculatum | 2012 | 10.1104/pp.111.187880 | https://doi.org/10.1104/pp.111.187880 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | TB | laticifer-specific functional experiment | RNAi laticifers with polymer and particle assays | |||||||||||||
| Cross-species literature evidence | TB_SRPP_2018 | JQ991928.1;JQ991929.1;JQ991930.1;JQ991931.1;JQ991932.1 | https://doi.org/10.1111/tpj.13829 | REF050 | Small rubber particle proteins from Taraxacum brevicorniculatum promote stress tolerance and influence the size and distribution of lipid droplets and artificial poly(cis‐1,4‐isoprene) bodies | 2018 | 10.1111/tpj.13829 | https://doi.org/10.1111/tpj.13829 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | TB | rubber-particle experiment | Rubber-particle extraction and heterologous assays | |||||||||||||
| Cross-species literature evidence | TB_NUCCORE | KP763637.1;MF471639.1;KJ911908.1;KJ911910.1 | https://www.ncbi.nlm.nih.gov/nuccore/JQ991925.1 | No explicitly associated publication identified | https://www.ncbi.nlm.nih.gov/nuccore/JQ991925.1 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | TB | sequence records | Public cDNA records | ||||||||||||||||
| Cross-species literature evidence | EU_TRANS_1996 | https://doi.org/10.1016/S0031-9422(96)00806-0 | REF051 | Structure and biosynthesis of trans-polyisoprene from Eucommia ulmoides | 1997 | 10.1016/S0031-9422(96)00806-0 | https://doi.org/10.1016/S0031-9422(96)00806-0 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | EU | polymer chemistry experiment | Eucommia gum | ||||||||||||||
| Cross-species literature evidence | EU_IPI_2012 | AB041629.2 | https://doi.org/10.1186/1472-6750-12-78 | REF052 | Overexpression of an isopentenyl diphosphate isomerase gene to enhance trans-polyisoprene production in Eucommia ulmoides Oliver | 2012 | 10.1186/1472-6750-12-78 | https://doi.org/10.1186/1472-6750-12-78 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | EU | direct genetic experiment | Transgenic roots | |||||||||||||
| Cross-species literature evidence | EU_GENOME_2021 | GCA_016647705.1;PRJNA599775 | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_016647705.1/ | No explicitly associated publication identified | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_016647705.1/ | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | DOI metadata verified; gene relationships retained from existing manual curation, without independently rechecking every experimental conclusion | EU | genome annotation | Weixian material leaf-derived reference |
S2 Samples and Reads
Download table TSV | Back to contents
| Category | Run accession | Project accession | Sample label | Tissue | Treatment | Time (h) | Replicate | Species | Included in uniform v4 | Run record URL | Mirror record URL | SRA archive URL | Read 1 URL | Read 1 MD5 | Read 1 bytes | Read 2 URL | Read 2 MD5 | Read 2 bytes | Reference ID | Download metadata source | Limitations | BioSample | Experiment | Platform | Library strategy | Layout | Read 1 filename | Read 2 filename |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RNA-seq | DRR879089 | PRJDB37370 | Tks_MeOH_leaf (KAS24111438) | leaf | MeOH | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR879089 | https://www.ebi.ac.uk/ena/browser/view/DRR879089 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-run-1330/DRR000/879/DRR879089/DRR879089.1 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||||||
| RNA-seq | DRR879090 | PRJDB37370 | Tks_MeOH_root (KAS24111439) | root | MeOH | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR879090 | https://www.ebi.ac.uk/ena/browser/view/DRR879090 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-run-1330/DRR000/879/DRR879090/DRR879090.1 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||||||
| RNA-seq | DRR879091 | PRJDB37370 | Tks_Mock_leaf (KAS24111440) | leaf | Mock | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR879091 | https://www.ebi.ac.uk/ena/browser/view/DRR879091 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-run-1330/DRR000/879/DRR879091/DRR879091.1 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||||||
| RNA-seq | DRR879092 | PRJDB37370 | Tks_Mock_root (KAS24111441) | root | Mock | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR879092 | https://www.ebi.ac.uk/ena/browser/view/DRR879092 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-run-1330/DRR000/879/DRR879092/DRR879092.1 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||||||
| RNA-seq | DRR737471 | PRJDB36270 | DRR737471 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737471 | https://www.ebi.ac.uk/ena/browser/view/DRR737471 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737471/DRR737471.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737471/DRR737471_1.fastq.gz | 35626500ec24353e8c4462c48a2c7081 | 1498908401 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737471/DRR737471_2.fastq.gz | c0b366da929d005f0c2efa059428170d | 1506111403 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737472 | PRJDB36270 | DRR737472 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737472 | https://www.ebi.ac.uk/ena/browser/view/DRR737472 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737472/DRR737472.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737472/DRR737472_1.fastq.gz | aabd55e5792ab5cdb7644eacc54c1da5 | 1472746168 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737472/DRR737472_2.fastq.gz | eace2fed7c1936a93d0e383b89645e87 | 1483422015 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737473 | PRJDB36270 | DRR737473 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737473 | https://www.ebi.ac.uk/ena/browser/view/DRR737473 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737473/DRR737473.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737473/DRR737473_1.fastq.gz | fdad2d253aee87417941cc3cca7dc6a6 | 1605293468 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737473/DRR737473_2.fastq.gz | 41d4988fddfa5a782773301d967176bb | 1645262743 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737474 | PRJDB36270 | DRR737474 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737474 | https://www.ebi.ac.uk/ena/browser/view/DRR737474 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737474/DRR737474.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737474/DRR737474_1.fastq.gz | 429de96f02314ff538a030c59bc24633 | 1382255571 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737474/DRR737474_2.fastq.gz | dc940c557c09fc7a25fc4ae548c24f9b | 1386240134 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737475 | PRJDB36270 | DRR737475 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737475 | https://www.ebi.ac.uk/ena/browser/view/DRR737475 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737475/DRR737475.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737475/DRR737475_1.fastq.gz | 7293d12b1da116c47708549794130b7b | 1311696343 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737475/DRR737475_2.fastq.gz | 979515c18bfe4dd397092fc892629cd3 | 1351662360 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737476 | PRJDB36270 | DRR737476 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737476 | https://www.ebi.ac.uk/ena/browser/view/DRR737476 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737476/DRR737476.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737476/DRR737476_1.fastq.gz | 9ddc862e019d3f7268254ee2e96c5ddd | 1425277963 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737476/DRR737476_2.fastq.gz | 1f44ba33a0c1d5cdcde597d37764cdec | 1492940857 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737477 | PRJDB36270 | DRR737477 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737477 | https://www.ebi.ac.uk/ena/browser/view/DRR737477 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737477/DRR737477.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737477/DRR737477_1.fastq.gz | 8393ce4d353ff3b0a8f3cf4b187e32f9 | 1449997855 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737477/DRR737477_2.fastq.gz | d33f2309ccc0cda7bf3c6dfbffcf9b0e | 1479808783 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737478 | PRJDB36270 | DRR737478 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737478 | https://www.ebi.ac.uk/ena/browser/view/DRR737478 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737478/DRR737478.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737478/DRR737478_1.fastq.gz | 6807162ffc86af1fd0ad97c2a5b11c12 | 1341805206 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737478/DRR737478_2.fastq.gz | f5d70293804ca2217e73f7e032b8cd65 | 1422024832 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | DRR737479 | PRJDB36270 | DRR737479 | metadata unavailable | metadata unavailable | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/DRR737479 | https://www.ebi.ac.uk/ena/browser/view/DRR737479 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos7/sra-pub-zq-41/DRR000/737/DRR737479/DRR737479.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737479/DRR737479_1.fastq.gz | 55f5b7b8546cccfac69d9e1d96935c1f | 1505111143 | https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR737/DRR737479/DRR737479_2.fastq.gz | 6a569fa139d03f32b99a70046d1edcb0 | 1563334045 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR33602310 | PRJNA1262623 | D04 (SRR33602310) | root | TKR2LR sample group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602310 | https://www.ebi.ac.uk/ena/browser/view/SRR33602310 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602310/SRR33602310.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/010/SRR33602310/SRR33602310_1.fastq.gz | fdb64f1a6573b8db330bbba0277ebc41 | 2312073776 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/010/SRR33602310/SRR33602310_2.fastq.gz | 465082c8e17b258efba648c1076a2f9e | 2397004048 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602309 | PRJNA1262623 | D05 (SRR33602309) | root | TKR2LR sample group | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602309 | https://www.ebi.ac.uk/ena/browser/view/SRR33602309 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602309/SRR33602309.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/009/SRR33602309/SRR33602309_1.fastq.gz | 97bb1682460e47d9015d23af75b4f014 | 1783857085 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/009/SRR33602309/SRR33602309_2.fastq.gz | aa939dc362dc0b8d2c9c54d1028e0028 | 1852892703 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602308 | PRJNA1262623 | D06 (SRR33602308) | root | TKR2LR sample group | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602308 | https://www.ebi.ac.uk/ena/browser/view/SRR33602308 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602308/SRR33602308.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/008/SRR33602308/SRR33602308_1.fastq.gz | 9a295ba27a89985f71c69e7f3383e6b0 | 1757958005 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/008/SRR33602308/SRR33602308_2.fastq.gz | 4a31286d769b6588539d42ee41e69245 | 1801534965 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602307 | PRJNA1262623 | D07 (SRR33602307) | root | TKR3ML sample group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602307 | https://www.ebi.ac.uk/ena/browser/view/SRR33602307 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602307/SRR33602307.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/007/SRR33602307/SRR33602307_1.fastq.gz | 4c492d8d01ce497fe5f7e5b03422af69 | 1594388814 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/007/SRR33602307/SRR33602307_2.fastq.gz | 62f8124469e7122c16b772b00156479b | 1669197500 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602306 | PRJNA1262623 | D08 (SRR33602306) | root | TKR3ML sample group | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602306 | https://www.ebi.ac.uk/ena/browser/view/SRR33602306 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602306/SRR33602306.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/006/SRR33602306/SRR33602306_1.fastq.gz | 98593c06d94584da51da4ae6e1238677 | 1845871336 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/006/SRR33602306/SRR33602306_2.fastq.gz | 02aa3f6f1b5788c2663a907ef8f510bd | 1909040952 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602305 | PRJNA1262623 | D09 (SRR33602305) | root | TKR3ML sample group | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602305 | https://www.ebi.ac.uk/ena/browser/view/SRR33602305 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602305/SRR33602305.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/005/SRR33602305/SRR33602305_1.fastq.gz | 02fc06b08984864128d554587d552052 | 2028634924 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/005/SRR33602305/SRR33602305_2.fastq.gz | 6cdaffd12c973127bf12c3a5be5cc5d4 | 2135518203 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602304 | PRJNA1262623 | D10 (SRR33602304) | root | TKR4LP sample group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602304 | https://www.ebi.ac.uk/ena/browser/view/SRR33602304 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602304/SRR33602304.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/004/SRR33602304/SRR33602304_1.fastq.gz | 3ee73c83d6574a70f0a5872bf523bfa3 | 1979952958 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/004/SRR33602304/SRR33602304_2.fastq.gz | 5826c579a7a7afe976175bd1dc5d6dc2 | 2029210975 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602316 | PRJNA1262623 | D11 (SRR33602316) | root | TKR4LP sample group | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602316 | https://www.ebi.ac.uk/ena/browser/view/SRR33602316 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602316/SRR33602316.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/016/SRR33602316/SRR33602316_1.fastq.gz | 9574053b55bcd6fe83715aaacbe7acf8 | 1861735520 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/016/SRR33602316/SRR33602316_2.fastq.gz | 4b4edfb18c52eac582665cd98cbccc7e | 1939049500 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602315 | PRJNA1262623 | D12 (SRR33602315) | root | TKR4LP sample group | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602315 | https://www.ebi.ac.uk/ena/browser/view/SRR33602315 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602315/SRR33602315.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/015/SRR33602315/SRR33602315_1.fastq.gz | da5c009173b21722cae06d378fa07a06 | 2114636804 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/015/SRR33602315/SRR33602315_2.fastq.gz | a51f6876c839468a3ea97dadc48026ef | 2190285600 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602314 | PRJNA1262623 | D13 (SRR33602314) | laticifer tissue | TKR5LAT sample group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602314 | https://www.ebi.ac.uk/ena/browser/view/SRR33602314 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602314/SRR33602314.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/014/SRR33602314/SRR33602314_1.fastq.gz | 431a618a7ec42c222458ddde33d063b7 | 1849643453 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/014/SRR33602314/SRR33602314_2.fastq.gz | 842bc6221f5453437870392e1d8359aa | 1900505455 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602313 | PRJNA1262623 | D14 (SRR33602313) | laticifer tissue | TKR5LAT sample group | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602313 | https://www.ebi.ac.uk/ena/browser/view/SRR33602313 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602313/SRR33602313.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/013/SRR33602313/SRR33602313_1.fastq.gz | acd198c04e99f48d7087994c3345c641 | 1984943235 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/013/SRR33602313/SRR33602313_2.fastq.gz | 19d6019975e3a29509a7ff97e4b11311 | 2019025828 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602312 | PRJNA1262623 | D15 (SRR33602312) | laticifer tissue | TKR5LAT sample group | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602312 | https://www.ebi.ac.uk/ena/browser/view/SRR33602312 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602312/SRR33602312.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/012/SRR33602312/SRR33602312_1.fastq.gz | 7919499f5519cab5030ced9723a1f21a | 1501913084 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/012/SRR33602312/SRR33602312_2.fastq.gz | a8b25d2c50dc4e72ce800c9335ff7d7f | 1558117797 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602318 | PRJNA1262623 | D01 (SRR33602318) | root | TKR1MR sample group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602318 | https://www.ebi.ac.uk/ena/browser/view/SRR33602318 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602318/SRR33602318.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/018/SRR33602318/SRR33602318_1.fastq.gz | be018ffca42408f5af0fd1bf53683afd | 2182050204 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/018/SRR33602318/SRR33602318_2.fastq.gz | 47df2658fba7da88572092fd90440ddf | 2269305895 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602317 | PRJNA1262623 | D02 (SRR33602317) | root | TKR1MR sample group | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602317 | https://www.ebi.ac.uk/ena/browser/view/SRR33602317 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602317/SRR33602317.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/017/SRR33602317/SRR33602317_1.fastq.gz | 4f2e8833a69c3ee8404f662237da20b5 | 2629452474 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/017/SRR33602317/SRR33602317_2.fastq.gz | 9a1e76748bb1d8450ed0f8ac0bebdd52 | 2749599206 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR33602311 | PRJNA1262623 | D03 (SRR33602311) | root | TKR1MR sample group | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR33602311 | https://www.ebi.ac.uk/ena/browser/view/SRR33602311 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR033/33602/SRR33602311/SRR33602311.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/011/SRR33602311/SRR33602311_1.fastq.gz | f873117baae8eda0eb64da49986b09a8 | 2063773352 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR336/011/SRR33602311/SRR33602311_2.fastq.gz | a0ff873894de43191838dce44cd0f6ac | 2151442242 | REF003 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR39458945 | PRJNA1490093 | N_0h_1_RNA (SRR39458945) | root | N treatment | 0 | 1 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458945 | https://www.ebi.ac.uk/ena/browser/view/SRR39458945 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458945/SRR39458945.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/045/SRR39458945/SRR39458945_1.fastq.gz | 2e184548a7c424939dd2a19c800a7358 | 1599636342 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/045/SRR39458945/SRR39458945_2.fastq.gz | d1598662d6a456a6425c8a259ed5ce4f | 1635519005 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458944 | PRJNA1490093 | N_0h_2_RNA (SRR39458944) | root | N treatment | 0 | 2 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458944 | https://www.ebi.ac.uk/ena/browser/view/SRR39458944 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458944/SRR39458944.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/044/SRR39458944/SRR39458944_1.fastq.gz | 07517270d7389b38769742e21cf3c878 | 1659937732 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/044/SRR39458944/SRR39458944_2.fastq.gz | ffe94414f522f95cda39dec518af8a23 | 1698812996 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458938 | PRJNA1490093 | N_0h_3_RNA (SRR39458938) | root | N treatment | 0 | 3 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458938 | https://www.ebi.ac.uk/ena/browser/view/SRR39458938 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458938/SRR39458938.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/038/SRR39458938/SRR39458938_1.fastq.gz | 54d57fef37afe6e17eacb7d5dc5f3d4b | 1689221234 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/038/SRR39458938/SRR39458938_2.fastq.gz | cbaa635f7f5e3eee09d0b9aa21367d96 | 1722573484 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458934 | PRJNA1490093 | N_12h_1_RNA (SRR39458934) | root | N treatment | 12 | 1 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458934 | https://www.ebi.ac.uk/ena/browser/view/SRR39458934 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458934/SRR39458934.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/034/SRR39458934/SRR39458934_1.fastq.gz | e8b3188309a3ff74e59ec14e524883de | 1538418544 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/034/SRR39458934/SRR39458934_2.fastq.gz | 7dc88ac472c619d67d49ff4b3051f25c | 1584956941 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458933 | PRJNA1490093 | N_12h_2_RNA (SRR39458933) | root | N treatment | 12 | 2 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458933 | https://www.ebi.ac.uk/ena/browser/view/SRR39458933 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458933/SRR39458933.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/033/SRR39458933/SRR39458933_1.fastq.gz | 727b3607682d0ca53e0ed2d9f677639d | 1482362725 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/033/SRR39458933/SRR39458933_2.fastq.gz | fda48d868644470d4c4e6c3a851b3fc0 | 1525350112 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458932 | PRJNA1490093 | N_12h_3_RNA (SRR39458932) | root | N treatment | 12 | 3 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458932 | https://www.ebi.ac.uk/ena/browser/view/SRR39458932 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458932/SRR39458932.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/032/SRR39458932/SRR39458932_1.fastq.gz | 3d8d866984ccc32629da2120441799b5 | 1663615317 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/032/SRR39458932/SRR39458932_2.fastq.gz | 8574b7b888a2074ffdd8c62ebd20391e | 1730813785 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458931 | PRJNA1490093 | N_24h_1_RNA (SRR39458931) | root | N treatment | 24 | 1 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458931 | https://www.ebi.ac.uk/ena/browser/view/SRR39458931 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458931/SRR39458931.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/031/SRR39458931/SRR39458931_1.fastq.gz | f31a8bf94d49d7047b56193c5fdc721e | 1686243726 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/031/SRR39458931/SRR39458931_2.fastq.gz | 6fe815fef85fc2246a48449ee37ccbb2 | 1763596113 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458943 | PRJNA1490093 | N_24h_2_RNA (SRR39458943) | root | N treatment | 24 | 2 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458943 | https://www.ebi.ac.uk/ena/browser/view/SRR39458943 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458943/SRR39458943.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/043/SRR39458943/SRR39458943_1.fastq.gz | 043ce94d22e9abf9501496957f02aa64 | 1621382475 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/043/SRR39458943/SRR39458943_2.fastq.gz | 96118c197e849d680e17c89f2556e635 | 1687057812 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458942 | PRJNA1490093 | N_24h_3_RNA (SRR39458942) | root | N treatment | 24 | 3 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458942 | https://www.ebi.ac.uk/ena/browser/view/SRR39458942 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458942/SRR39458942.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/042/SRR39458942/SRR39458942_1.fastq.gz | 3475d152bfe507d913c84cab2abfa0dd | 1498392101 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/042/SRR39458942/SRR39458942_2.fastq.gz | aeb2e7b477b9be5e4ae6ea7dfeb8b6e8 | 1559467043 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458941 | PRJNA1490093 | N_48h_1_RNA (SRR39458941) | root | N treatment | 48 | 1 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458941 | https://www.ebi.ac.uk/ena/browser/view/SRR39458941 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458941/SRR39458941.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/041/SRR39458941/SRR39458941_1.fastq.gz | 3690f04b09b0a88bfb95ebfcf0c08f8f | 1699134534 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/041/SRR39458941/SRR39458941_2.fastq.gz | 79335c86b576c5538b38ba870483936c | 1770980945 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458940 | PRJNA1490093 | N_48h_2_RNA (SRR39458940) | root | N treatment | 48 | 2 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458940 | https://www.ebi.ac.uk/ena/browser/view/SRR39458940 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458940/SRR39458940.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/040/SRR39458940/SRR39458940_1.fastq.gz | 95107fc92098e4168516606584f2585d | 1583371133 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/040/SRR39458940/SRR39458940_2.fastq.gz | c2dda0231e9b4f58443e3e1a2bb06b32 | 1642564483 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458939 | PRJNA1490093 | N_48h_3_RNA (SRR39458939) | root | N treatment | 48 | 3 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458939 | https://www.ebi.ac.uk/ena/browser/view/SRR39458939 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458939/SRR39458939.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/039/SRR39458939/SRR39458939_1.fastq.gz | d3d5eaed5e52a2ba7d86eb773ba1814d | 1432774874 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/039/SRR39458939/SRR39458939_2.fastq.gz | 582755ea04c01494fbae4ebf25d7e231 | 1499818264 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458937 | PRJNA1490093 | N_6h_1_RNA (SRR39458937) | root | N treatment | 6 | 1 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458937 | https://www.ebi.ac.uk/ena/browser/view/SRR39458937 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458937/SRR39458937.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/037/SRR39458937/SRR39458937_1.fastq.gz | f0428fd3ccdaa59e0add595d54ab9889 | 1426525349 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/037/SRR39458937/SRR39458937_2.fastq.gz | a6cc3008ad0323db0385f02e6ddda84d | 1463690468 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458936 | PRJNA1490093 | N_6h_2_RNA (SRR39458936) | root | N treatment | 6 | 2 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458936 | https://www.ebi.ac.uk/ena/browser/view/SRR39458936 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458936/SRR39458936.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/036/SRR39458936/SRR39458936_1.fastq.gz | b86afa66b918ea706c9e0831c1c4d442 | 1676799566 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/036/SRR39458936/SRR39458936_2.fastq.gz | 95fbaf2306bf26efd074dce542fba0ec | 1717620766 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR39458935 | PRJNA1490093 | N_6h_3_RNA (SRR39458935) | root | N treatment | 6 | 3 | True | https://www.ncbi.nlm.nih.gov/sra/SRR39458935 | https://www.ebi.ac.uk/ena/browser/view/SRR39458935 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR039/39458/SRR39458935/SRR39458935.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/035/SRR39458935/SRR39458935_1.fastq.gz | 6fc803bf63bdad25e6f13044c54ca6c7 | 1484702842 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR394/035/SRR39458935/SRR39458935_2.fastq.gz | 3ffaf0cd596ae817b21fe123d009c648 | 1517996416 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||||
| RNA-seq | SRR5181662 | PRJNA361575 | TK-R18 (SRR5181662) | metadata unavailable | TK-RNAseq library group | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR5181662 | https://www.ebi.ac.uk/ena/browser/view/SRR5181662 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR005/181/SRR5181662.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5181662/SRR5181662_1.fastq.gz | 1466d5fca6665fe380fa2dcfdf1d96da | 2232747614 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/002/SRR5181662/SRR5181662_2.fastq.gz | 4052b5ebd2a2fdeea4f0667b36b5afc8 | 2304907527 | REF004 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR5181663 | PRJNA361575 | TK-R14 (SRR5181663) | metadata unavailable | TK-RNAseq library group | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR5181663 | https://www.ebi.ac.uk/ena/browser/view/SRR5181663 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR005/181/SRR5181663.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/003/SRR5181663/SRR5181663_1.fastq.gz | 341c56d98e2baa98b1ad17c66fb80370 | 2459437647 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/003/SRR5181663/SRR5181663_2.fastq.gz | 9b8cd43cbfad7487bd9b46b76c9e9eab | 2533743916 | REF004 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR5181664 | PRJNA361575 | TK-R10 (SRR5181664) | metadata unavailable | TK-RNAseq library group | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR5181664 | https://www.ebi.ac.uk/ena/browser/view/SRR5181664 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR005/181/SRR5181664.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/004/SRR5181664/SRR5181664_1.fastq.gz | e6a77afb647abb67837847cdbbaafc91 | 2662901751 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/004/SRR5181664/SRR5181664_2.fastq.gz | 98c19c0c939e421e8b0c7ab587370603 | 2747377118 | REF004 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR5181665 | PRJNA361575 | TK-R9 (SRR5181665) | metadata unavailable | TK-RNAseq library group | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR5181665 | https://www.ebi.ac.uk/ena/browser/view/SRR5181665 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR005/181/SRR5181665.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/005/SRR5181665/SRR5181665_1.fastq.gz | 2f7a16ec7440a0e6047b47f419a17c17 | 2884695080 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/005/SRR5181665/SRR5181665_2.fastq.gz | 0506da54198c5d106d490250e6dae281 | 2970090882 | REF004 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR5181667 | PRJNA361575 | TK-R6 (SRR5181667) | metadata unavailable | TK-RNAseq library group | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR5181667 | https://www.ebi.ac.uk/ena/browser/view/SRR5181667 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR005/181/SRR5181667.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/007/SRR5181667/SRR5181667_1.fastq.gz | e0046dde2385aa7e06fce9f004c4427e | 2842343584 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/007/SRR5181667/SRR5181667_2.fastq.gz | b567aa9296fa476990873347d1118fe9 | 2926393281 | REF004 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR5181661 | PRJNA361575 | TK-R21 (SRR5181661) | metadata unavailable | TK-RNAseq library group | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR5181661 | https://www.ebi.ac.uk/ena/browser/view/SRR5181661 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR005/181/SRR5181661.sralite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/001/SRR5181661/SRR5181661_1.fastq.gz | 9ac6533d5738ea64c222b81f06a2161f | 2364019780 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/001/SRR5181661/SRR5181661_2.fastq.gz | 7fc302791990e3f9b100dd598edaf10d | 2433672593 | REF004 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR6149669 | PRJNA413689 | NR-LIB (SRR6149669) | whole plant/tissue mix | material comparison | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR6149669 | https://www.ebi.ac.uk/ena/browser/view/SRR6149669 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1211/SRR006/149/SRR6149669/SRR6149669.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR614/009/SRR6149669/SRR6149669.fastq.gz | 45612efa14855abad3b32d5e7dec68cd | 79613417 | REF005 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR6149668 | PRJNA413689 | HR-LIB (SRR6149668) | whole plant/tissue mix | material comparison | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR6149668 | https://www.ebi.ac.uk/ena/browser/view/SRR6149668 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1211/SRR006/149/SRR6149668/SRR6149668.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR614/008/SRR6149668/SRR6149668.fastq.gz | 76f420510ba89faafa94f141d4decd62 | 89779721 | REF005 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR6149667 | PRJNA413689 | LR-LIB (SRR6149667) | whole plant/tissue mix | material comparison | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR6149667 | https://www.ebi.ac.uk/ena/browser/view/SRR6149667 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1211/SRR006/149/SRR6149667/SRR6149667.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR614/007/SRR6149667/SRR6149667.fastq.gz | 6bd2d2fc7b092294736e5982ff4c2624 | 88187150 | REF005 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095306 | PRJNA539838 | R12M1_1_20190318 (SRR9095306) | metadata unavailable | R12M1 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095306 | https://www.ebi.ac.uk/ena/browser/view/SRR9095306 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1216/SRR009/9095/SRR9095306/SRR9095306.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/006/SRR9095306/SRR9095306.fastq.gz | ec49ea5ff8021e15c89d5ad487f41961 | 5732845755 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095307 | PRJNA539838 | R1M3_1_20190318 (SRR9095307) | metadata unavailable | R1M3 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095307 | https://www.ebi.ac.uk/ena/browser/view/SRR9095307 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1216/SRR009/9095/SRR9095307/SRR9095307.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/007/SRR9095307/SRR9095307.fastq.gz | 2c12a6e22ff58e4b887ff4911ad092f2 | 5841840652 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095305 | PRJNA539838 | R3M3_1_20190318 (SRR9095305) | metadata unavailable | R3M3 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095305 | https://www.ebi.ac.uk/ena/browser/view/SRR9095305 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095305/SRR9095305.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/005/SRR9095305/SRR9095305.fastq.gz | 7cd3299320279335540ed81dfe81a655 | 5724856796 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095304 | PRJNA539838 | R6M1_1_20190318 (SRR9095304) | metadata unavailable | R6M1 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095304 | https://www.ebi.ac.uk/ena/browser/view/SRR9095304 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1216/SRR009/9095/SRR9095304/SRR9095304.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/004/SRR9095304/SRR9095304.fastq.gz | b4e29fefb0f19df294753c1f2e418963 | 5697418847 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095303 | PRJNA539838 | R6M2_1_20190318 (SRR9095303) | metadata unavailable | R6M2 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095303 | https://www.ebi.ac.uk/ena/browser/view/SRR9095303 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1211/SRR009/095/SRR9095303/SRR9095303.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/003/SRR9095303/SRR9095303.fastq.gz | 3842a11656db1a90725f63c55ccc3085 | 5649092234 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095302 | PRJNA539838 | R6M3_1_20190318 (SRR9095302) | metadata unavailable | R6M3 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095302 | https://www.ebi.ac.uk/ena/browser/view/SRR9095302 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1211/SRR009/095/SRR9095302/SRR9095302.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/002/SRR9095302/SRR9095302.fastq.gz | 1b8453de88042530c352a1317daf9495 | 5674139320 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095317 | PRJNA539838 | R12M2_1_20190318 (SRR9095317) | metadata unavailable | R12M2 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095317 | https://www.ebi.ac.uk/ena/browser/view/SRR9095317 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095317/SRR9095317.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/007/SRR9095317/SRR9095317.fastq.gz | 35a06ef0222b86890de19c078c3f243f | 5430072309 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095315 | PRJNA539838 | R12M3_1_20190318 (SRR9095315) | metadata unavailable | R12M3 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095315 | https://www.ebi.ac.uk/ena/browser/view/SRR9095315 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1216/SRR009/9095/SRR9095315/SRR9095315.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/005/SRR9095315/SRR9095315.fastq.gz | eb0c9b77bdec6c1bc244d191f7a6a4c0 | 2726318577 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095316 | PRJNA539838 | R12M3_2_20190318 (SRR9095316) | metadata unavailable | R12M3 group | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095316 | https://www.ebi.ac.uk/ena/browser/view/SRR9095316 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1216/SRR009/9095/SRR9095316/SRR9095316.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/006/SRR9095316/SRR9095316.fastq.gz | fefb19a0ff6205117525fff5f6ef0187 | 2798759049 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095314 | PRJNA539838 | R18M1_1_20190318 (SRR9095314) | metadata unavailable | R18M1 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095314 | https://www.ebi.ac.uk/ena/browser/view/SRR9095314 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095314/SRR9095314.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/004/SRR9095314/SRR9095314.fastq.gz | 699f3b97c6f68dc529beed9254363957 | 5405060922 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095313 | PRJNA539838 | R18M2_1_20190318 (SRR9095313) | metadata unavailable | R18M2 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095313 | https://www.ebi.ac.uk/ena/browser/view/SRR9095313 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095313/SRR9095313.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/003/SRR9095313/SRR9095313.fastq.gz | 9b361bf6d083dbad8c5cf6adbdba11f5 | 5821844480 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095312 | PRJNA539838 | R18M3_1_20190318 (SRR9095312) | metadata unavailable | R18M3 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095312 | https://www.ebi.ac.uk/ena/browser/view/SRR9095312 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095312/SRR9095312.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/002/SRR9095312/SRR9095312.fastq.gz | e5a73127f8be7fac456eea6db11c44eb | 5820109707 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095309 | PRJNA539838 | R1M1_1_20190318 (SRR9095309) | metadata unavailable | R1M1 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095309 | https://www.ebi.ac.uk/ena/browser/view/SRR9095309 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095309/SRR9095309.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/009/SRR9095309/SRR9095309.fastq.gz | 0f28ac50474d5fcabe02daeabfc81d53 | 5833771792 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095310 | PRJNA539838 | R1M2_1_20190318 (SRR9095310) | metadata unavailable | R1M2 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095310 | https://www.ebi.ac.uk/ena/browser/view/SRR9095310 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095310/SRR9095310.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/000/SRR9095310/SRR9095310.fastq.gz | e161882e215348198d74a626ea1d3b04 | 5913228509 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095308 | PRJNA539838 | R3M1_1_20190318 (SRR9095308) | metadata unavailable | R3M1 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095308 | https://www.ebi.ac.uk/ena/browser/view/SRR9095308 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1214/SRR009/9095/SRR9095308/SRR9095308.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/008/SRR9095308/SRR9095308.fastq.gz | 0809ac1bf82860ebae2b3f850ea076ac | 5882369311 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR9095311 | PRJNA539838 | R3M2_1_20190318 (SRR9095311) | metadata unavailable | R3M2 group | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR9095311 | https://www.ebi.ac.uk/ena/browser/view/SRR9095311 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos12/sra-pub-zq-1216/SRR009/9095/SRR9095311/SRR9095311.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR909/001/SRR9095311/SRR9095311.fastq.gz | 2627b344fe51e57be27e5308d28a3024 | 5748539553 | REF006 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||||
| RNA-seq | SRR15099898 | PRJNA681093 | XJCRB2-2 (SRR15099898) | metadata unavailable | XJCRB2 library group | metadata unavailable | 2 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099898 | https://www.ebi.ac.uk/ena/browser/view/SRR15099898 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR015/15099/SRR15099898/SRR15099898.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/098/SRR15099898/SRR15099898_1.fastq.gz | 7734e09160e7e43e07f4eeff5dabfe13 | 2088346376 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/098/SRR15099898/SRR15099898_2.fastq.gz | 10de56ba427993a8c61043487f099704 | 2050350154 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099899 | PRJNA681093 | XJCL-2 (SRR15099899) | metadata unavailable | XJCL library group | metadata unavailable | 2 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099899 | https://www.ebi.ac.uk/ena/browser/view/SRR15099899 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099899/SRR15099899.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/099/SRR15099899/SRR15099899_1.fastq.gz | 76dda491374aeb373595fb38c40f540a | 1348654139 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/099/SRR15099899/SRR15099899_2.fastq.gz | 167347266c744ac8ec911dca9d25ae0b | 1424684317 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099900 | PRJNA681093 | XJCL-1 (SRR15099900) | metadata unavailable | XJCL library group | metadata unavailable | 1 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099900 | https://www.ebi.ac.uk/ena/browser/view/SRR15099900 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099900/SRR15099900.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/000/SRR15099900/SRR15099900_1.fastq.gz | db096a07055790d30e9d69b040f77c15 | 1495941005 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/000/SRR15099900/SRR15099900_2.fastq.gz | b8112cbdd1b97656cf14715e9032c86c | 1570336936 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099901 | PRJNA681093 | XJCRB2-1 (SRR15099901) | metadata unavailable | XJCRB2 library group | metadata unavailable | 1 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099901 | https://www.ebi.ac.uk/ena/browser/view/SRR15099901 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099901/SRR15099901.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/001/SRR15099901/SRR15099901_1.fastq.gz | f632ae9056c781a5e20143e5275f4b43 | 1991297783 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/001/SRR15099901/SRR15099901_2.fastq.gz | f3d5939339d31527ec6fde9ffc844faa | 1920153267 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099902 | PRJNA681093 | XJCRB1-3 (SRR15099902) | metadata unavailable | XJCRB1 library group | metadata unavailable | 3 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099902 | https://www.ebi.ac.uk/ena/browser/view/SRR15099902 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR015/15099/SRR15099902/SRR15099902.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/002/SRR15099902/SRR15099902_1.fastq.gz | a384fe7ef6d895a6a7aa3fc8207c6f4c | 1703109202 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/002/SRR15099902/SRR15099902_2.fastq.gz | 7ce746250b44b347204e897232d17395 | 1796897607 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099903 | PRJNA681093 | XJCRB1-2 (SRR15099903) | metadata unavailable | XJCRB1 library group | metadata unavailable | 2 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099903 | https://www.ebi.ac.uk/ena/browser/view/SRR15099903 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099903/SRR15099903.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/003/SRR15099903/SRR15099903_1.fastq.gz | d19a25808ee3aded1ef8dfaa6b207745 | 1694684514 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/003/SRR15099903/SRR15099903_2.fastq.gz | 2b9a0346b250a4ba56d77391d6de3897 | 1845622012 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099904 | PRJNA681093 | XJCRB1-1 (SRR15099904) | metadata unavailable | XJCRB1 library group | metadata unavailable | 1 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099904 | https://www.ebi.ac.uk/ena/browser/view/SRR15099904 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099904/SRR15099904.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/004/SRR15099904/SRR15099904_1.fastq.gz | 8d72077226f3f3a10f38a48f3c4801f2 | 1830802229 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/004/SRR15099904/SRR15099904_2.fastq.gz | 2705e2792e3b13d7fe8eac12833b22df | 1949543265 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099905 | PRJNA681093 | XJCVB-3 (SRR15099905) | metadata unavailable | XJCVB library group | metadata unavailable | 3 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099905 | https://www.ebi.ac.uk/ena/browser/view/SRR15099905 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15099/SRR15099905/SRR15099905.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/005/SRR15099905/SRR15099905_1.fastq.gz | aec49c7ebee5e3cd1d88eecd2d4437ae | 1243513707 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/005/SRR15099905/SRR15099905_2.fastq.gz | d52ac729b0dd7dad68ff473fb4e84991 | 1302106958 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099906 | PRJNA681093 | XJCVB-2 (SRR15099906) | metadata unavailable | XJCVB library group | metadata unavailable | 2 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099906 | https://www.ebi.ac.uk/ena/browser/view/SRR15099906 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099906/SRR15099906.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/006/SRR15099906/SRR15099906_1.fastq.gz | b44f2d5da232c91d96ae67d8801195b9 | 1406885302 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/006/SRR15099906/SRR15099906_2.fastq.gz | 8396100d1fafd3fb619494e798d621fd | 1487063480 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099907 | PRJNA681093 | XJCVB-1 (SRR15099907) | metadata unavailable | XJCVB library group | metadata unavailable | 1 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099907 | https://www.ebi.ac.uk/ena/browser/view/SRR15099907 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15099/SRR15099907/SRR15099907.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/007/SRR15099907/SRR15099907_1.fastq.gz | e022fb938e03a5cb95054761bf146f5a | 1314238373 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/007/SRR15099907/SRR15099907_2.fastq.gz | 88823aadee2f3f1405ca6a4e0ba87f45 | 1343291963 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099908 | PRJNA681093 | XJCL-3 (SRR15099908) | metadata unavailable | XJCL library group | metadata unavailable | 3 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099908 | https://www.ebi.ac.uk/ena/browser/view/SRR15099908 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099908/SRR15099908.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/008/SRR15099908/SRR15099908_1.fastq.gz | e70502defaf6af6488420d0298d3535e | 1253508774 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/008/SRR15099908/SRR15099908_2.fastq.gz | db228ab90357a3f9d964f59194b09c6b | 1328331660 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15099897 | PRJNA681093 | XJCRB2-3 (SRR15099897) | metadata unavailable | XJCRB2 library group | metadata unavailable | 3 | Taraxacum kok-saghyz | False | https://www.ncbi.nlm.nih.gov/sra/SRR15099897 | https://www.ebi.ac.uk/ena/browser/view/SRR15099897 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15099/SRR15099897/SRR15099897.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/097/SRR15099897/SRR15099897_1.fastq.gz | cb7db40caf7cd5e44fcbdd0876092fec | 1894292711 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/097/SRR15099897/SRR15099897_2.fastq.gz | b3bc636d0d3ad51a1475b35a11c021aa | 1851754286 | REF007 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094076 | PRJNA745038 | MJ0_R2 (SRR15094076) | laticifer tissue | MeJA | 0 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094076 | https://www.ebi.ac.uk/ena/browser/view/SRR15094076 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR015/15094/SRR15094076/SRR15094076.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/076/SRR15094076/SRR15094076_1.fastq.gz | 750937fc87a60971d3fc9e1207ac4e54 | 2021929525 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/076/SRR15094076/SRR15094076_2.fastq.gz | 4a10ed1921c8523de9e3fd1882a0c7f4 | 2438235629 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094075 | PRJNA745038 | MJ0_R3 (SRR15094075) | laticifer tissue | MeJA | 0 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094075 | https://www.ebi.ac.uk/ena/browser/view/SRR15094075 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15094/SRR15094075/SRR15094075.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/075/SRR15094075/SRR15094075_1.fastq.gz | b5ad117f5b254f5ff9ba0546a1fd3045 | 1827240618 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/075/SRR15094075/SRR15094075_2.fastq.gz | c17fb59cb0c352e16a30f48d145ea6cf | 2229659933 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094071 | PRJNA745038 | MJ24_R1 (SRR15094071) | laticifer tissue | MeJA | 24 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094071 | https://www.ebi.ac.uk/ena/browser/view/SRR15094071 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15094/SRR15094071/SRR15094071.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/071/SRR15094071/SRR15094071_1.fastq.gz | f3c384724dd4e687200a64cb67b0b1b5 | 2017948920 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/071/SRR15094071/SRR15094071_2.fastq.gz | ddc3e53c7fc4bbdda65d35901739c1c6 | 2442973730 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094070 | PRJNA745038 | MJ24_R2 (SRR15094070) | laticifer tissue | MeJA | 24 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094070 | https://www.ebi.ac.uk/ena/browser/view/SRR15094070 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15094/SRR15094070/SRR15094070.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/070/SRR15094070/SRR15094070_1.fastq.gz | 5a08a3d001f8e392ae6942f3b35f0b7b | 1872957648 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/070/SRR15094070/SRR15094070_2.fastq.gz | efb53cc117f68fdc5a49c91bc17fc310 | 2274461412 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094069 | PRJNA745038 | MJ24_R3 (SRR15094069) | laticifer tissue | MeJA | 24 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094069 | https://www.ebi.ac.uk/ena/browser/view/SRR15094069 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15094/SRR15094069/SRR15094069.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/069/SRR15094069/SRR15094069_1.fastq.gz | c6d41e56cd3c16998d642980c05cf257 | 2010009008 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/069/SRR15094069/SRR15094069_2.fastq.gz | 40fbb6c3dfda4f382c03f2f11e63f8e5 | 2451970021 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094077 | PRJNA745038 | MJ0_R1 (SRR15094077) | laticifer tissue | MeJA | 0 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094077 | https://www.ebi.ac.uk/ena/browser/view/SRR15094077 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15094/SRR15094077/SRR15094077.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/077/SRR15094077/SRR15094077_1.fastq.gz | 24862008ce3a9f9da9c0652a336d1fcf | 1923253579 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/077/SRR15094077/SRR15094077_2.fastq.gz | a3376b762318ffc8be4ca540d931f21d | 2345367194 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094074 | PRJNA745038 | MJ6_R1 (SRR15094074) | laticifer tissue | MeJA | 6 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094074 | https://www.ebi.ac.uk/ena/browser/view/SRR15094074 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR015/15094/SRR15094074/SRR15094074.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/074/SRR15094074/SRR15094074_1.fastq.gz | ae8bfa34bf41c54384f1bf9a52e49fd3 | 1719226008 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/074/SRR15094074/SRR15094074_2.fastq.gz | 0afb03fea64eb21a74cdcb24221341a9 | 2058796533 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094073 | PRJNA745038 | MJ6_R2 (SRR15094073) | laticifer tissue | MeJA | 6 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094073 | https://www.ebi.ac.uk/ena/browser/view/SRR15094073 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-818/SRR015/15094/SRR15094073/SRR15094073.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/073/SRR15094073/SRR15094073_1.fastq.gz | 08be3b550931cd3acf9bfff3ac4c88df | 1832129479 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/073/SRR15094073/SRR15094073_2.fastq.gz | 9db67a46c2a12d72b99390c7109d5b59 | 2207517598 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR15094072 | PRJNA745038 | MJ6_R3 (SRR15094072) | laticifer tissue | MeJA | 6 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR15094072 | https://www.ebi.ac.uk/ena/browser/view/SRR15094072 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15094/SRR15094072/SRR15094072.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/072/SRR15094072/SRR15094072_1.fastq.gz | 428f6a2c596c59fe6dbf78c6c661139b | 2039913546 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR150/072/SRR15094072/SRR15094072_2.fastq.gz | a62547713e0ec5b140f4a529fe965991 | 2469696231 | REF008 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788842 | PRJNA827459 | S076 (SRR18788842) | root | control | 0 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788842 | https://www.ebi.ac.uk/ena/browser/view/SRR18788842 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR018/18788/SRR18788842/SRR18788842.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/042/SRR18788842/SRR18788842_1.fastq.gz | 176aa5740e1bb81bab70b2266932db77 | 1411984046 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/042/SRR18788842/SRR18788842_2.fastq.gz | 6632cd39308129da9191147b0deaae08 | 1461036459 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788841 | PRJNA827459 | S077 (SRR18788841) | root | control | 0 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788841 | https://www.ebi.ac.uk/ena/browser/view/SRR18788841 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-818/SRR018/18788/SRR18788841/SRR18788841.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/041/SRR18788841/SRR18788841_1.fastq.gz | b2bb0d0807667134b820d1eb926b8bf2 | 1583741782 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/041/SRR18788841/SRR18788841_2.fastq.gz | 619c3ae10255ffa0a1c279b6ef01391b | 1630671836 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788835 | PRJNA827459 | S078 (SRR18788835) | root | control | 0 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788835 | https://www.ebi.ac.uk/ena/browser/view/SRR18788835 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1301/SRR018/18788/SRR18788835/SRR18788835.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/035/SRR18788835/SRR18788835_1.fastq.gz | f781f9a82b32d06e43e7acfa804de8e5 | 1737659883 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/035/SRR18788835/SRR18788835_2.fastq.gz | 7c2844bbea85ebf8df323630f63585f9 | 1790399948 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788838 | PRJNA827459 | S088 (SRR18788838) | root | ethylene | 24 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788838 | https://www.ebi.ac.uk/ena/browser/view/SRR18788838 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR018/18788/SRR18788838/SRR18788838.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/038/SRR18788838/SRR18788838_1.fastq.gz | 107650023e537d3d0685811a32612489 | 1347422213 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/038/SRR18788838/SRR18788838_2.fastq.gz | cde2fb3e3389b97329da182e395fef97 | 1378550276 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788837 | PRJNA827459 | S089 (SRR18788837) | root | ethylene | 24 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788837 | https://www.ebi.ac.uk/ena/browser/view/SRR18788837 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR018/18788/SRR18788837/SRR18788837.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/037/SRR18788837/SRR18788837_1.fastq.gz | b8df00b0e22a7a427ee60cfc625bcce8 | 1334964379 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/037/SRR18788837/SRR18788837_2.fastq.gz | b736a7f12344edb64899810346160c20 | 1362085125 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788836 | PRJNA827459 | S090 (SRR18788836) | root | ethylene | 24 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788836 | https://www.ebi.ac.uk/ena/browser/view/SRR18788836 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR018/18788/SRR18788836/SRR18788836.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/036/SRR18788836/SRR18788836_1.fastq.gz | 5a1e36f7150bbafef6f9b3843b92c613 | 1638473116 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/036/SRR18788836/SRR18788836_2.fastq.gz | 4b7fc1c13a67a8c1ed16a2f48b27d9cd | 1672057908 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788834 | PRJNA827459 | S079 (SRR18788834) | root | ethylene | 2 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788834 | https://www.ebi.ac.uk/ena/browser/view/SRR18788834 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1301/SRR018/18788/SRR18788834/SRR18788834.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/034/SRR18788834/SRR18788834_1.fastq.gz | 73dc8c1290fe4b11f71f3907e692cac6 | 1804431880 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/034/SRR18788834/SRR18788834_2.fastq.gz | b337ba625c686e7563734cbf5188fe60 | 1857336585 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788833 | PRJNA827459 | S080 (SRR18788833) | root | ethylene | 2 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788833 | https://www.ebi.ac.uk/ena/browser/view/SRR18788833 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR018/18788/SRR18788833/SRR18788833.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/033/SRR18788833/SRR18788833_1.fastq.gz | 2e06ebe23132125f04523d6bfb5a0229 | 1413719370 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/033/SRR18788833/SRR18788833_2.fastq.gz | b94b2cc888460a0bff438a1ef072b168 | 1485761798 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788832 | PRJNA827459 | S081 (SRR18788832) | root | ethylene | 2 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788832 | https://www.ebi.ac.uk/ena/browser/view/SRR18788832 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR018/18788/SRR18788832/SRR18788832.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/032/SRR18788832/SRR18788832_1.fastq.gz | 4d5fe7942cb59cc11dfa81ac399134e5 | 1407615899 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/032/SRR18788832/SRR18788832_2.fastq.gz | 282dc4055694d6d9b654191c89bd63f4 | 1435918663 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788831 | PRJNA827459 | S082 (SRR18788831) | root | ethylene | 4 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788831 | https://www.ebi.ac.uk/ena/browser/view/SRR18788831 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR018/18788/SRR18788831/SRR18788831.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/031/SRR18788831/SRR18788831_1.fastq.gz | fee9632e50f96aa34d56340ebd5116a9 | 1412464963 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/031/SRR18788831/SRR18788831_2.fastq.gz | ee2fbed622211cfb834e1cb2af3277f6 | 1464149154 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788830 | PRJNA827459 | S083 (SRR18788830) | root | ethylene | 4 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788830 | https://www.ebi.ac.uk/ena/browser/view/SRR18788830 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR018/18788/SRR18788830/SRR18788830.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/030/SRR18788830/SRR18788830_1.fastq.gz | ab7fbbc08c9cc414a4ced72773d6bb16 | 1516382369 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/030/SRR18788830/SRR18788830_2.fastq.gz | 39fe475fe1b7e572e41488f08dd4d8ea | 1547747943 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788829 | PRJNA827459 | S084 (SRR18788829) | root | ethylene | 4 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788829 | https://www.ebi.ac.uk/ena/browser/view/SRR18788829 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR018/18788/SRR18788829/SRR18788829.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/029/SRR18788829/SRR18788829_1.fastq.gz | c8cc69660a571646f43f6c4317063b69 | 1273585687 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/029/SRR18788829/SRR18788829_2.fastq.gz | bf011a486d1b66d307135160fb2b16fe | 1311419210 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788828 | PRJNA827459 | S085 (SRR18788828) | root | ethylene | 8 | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788828 | https://www.ebi.ac.uk/ena/browser/view/SRR18788828 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1301/SRR018/18788/SRR18788828/SRR18788828.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/028/SRR18788828/SRR18788828_1.fastq.gz | 72e85aa6997e99f74460ed9492637f53 | 1425653574 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/028/SRR18788828/SRR18788828_2.fastq.gz | 177e7a63c66244b0efd88694bc36a152 | 1451000538 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788840 | PRJNA827459 | S086 (SRR18788840) | root | ethylene | 8 | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788840 | https://www.ebi.ac.uk/ena/browser/view/SRR18788840 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR018/18788/SRR18788840/SRR18788840.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/040/SRR18788840/SRR18788840_1.fastq.gz | 40df79637c70ecdb765f6c1b5b6e32dc | 1452189928 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/040/SRR18788840/SRR18788840_2.fastq.gz | 6d6893e90c16a6f9282071cd610a4ac4 | 1486523260 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR18788839 | PRJNA827459 | S087 (SRR18788839) | root | ethylene | 8 | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR18788839 | https://www.ebi.ac.uk/ena/browser/view/SRR18788839 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR018/18788/SRR18788839/SRR18788839.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/039/SRR18788839/SRR18788839_1.fastq.gz | 2fe89070736042ffeeb604f6da44a025 | 1379989131 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR187/039/SRR18788839/SRR18788839_2.fastq.gz | cf650a38fe94f270793d8c6ba9a10254 | 1440033955 | REF009 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR22996052 | PRJNA918839 | LPE1 (SRR22996052) | root | LPE treatment | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR22996052 | https://www.ebi.ac.uk/ena/browser/view/SRR22996052 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR022/22996/SRR22996052/SRR22996052.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/052/SRR22996052/SRR22996052_1.fastq.gz | d50652465c2a44c8f8764f94fb76b081 | 843391800 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/052/SRR22996052/SRR22996052_2.fastq.gz | 9b9916ad0fb8c6a19a24631983d0eeb4 | 872023815 | REF010 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR22996051 | PRJNA918839 | LPE2 (SRR22996051) | root | LPE treatment | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR22996051 | https://www.ebi.ac.uk/ena/browser/view/SRR22996051 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR022/22996/SRR22996051/SRR22996051.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/051/SRR22996051/SRR22996051_1.fastq.gz | 41426c720980785275a4015e17172d0d | 896616686 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/051/SRR22996051/SRR22996051_2.fastq.gz | 19b9a0cdedd6164b4e0185a567e55c0a | 930290128 | REF010 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR22996050 | PRJNA918839 | LPE3 (SRR22996050) | root | LPE treatment | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR22996050 | https://www.ebi.ac.uk/ena/browser/view/SRR22996050 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR022/22996/SRR22996050/SRR22996050.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/050/SRR22996050/SRR22996050_1.fastq.gz | a2ce81b9889068b53cf70d40fc009800 | 784932000 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/050/SRR22996050/SRR22996050_2.fastq.gz | 86c5ce8dba571537311f7dd814151fe1 | 813983126 | REF010 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR22996055 | PRJNA918839 | Mock1 (SRR22996055) | root | mock | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR22996055 | https://www.ebi.ac.uk/ena/browser/view/SRR22996055 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR022/22996/SRR22996055/SRR22996055.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/055/SRR22996055/SRR22996055_1.fastq.gz | 5ade6e4655320020bf2ebecd5ceea928 | 832437322 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/055/SRR22996055/SRR22996055_2.fastq.gz | a6fd505ad84b65a803e9fb8f8fd794e9 | 855041876 | REF010 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR22996054 | PRJNA918839 | Mock2 (SRR22996054) | root | mock | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR22996054 | https://www.ebi.ac.uk/ena/browser/view/SRR22996054 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR022/22996/SRR22996054/SRR22996054.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/054/SRR22996054/SRR22996054_1.fastq.gz | 11c85d09b663e3b4ef17243578f8623b | 814818929 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/054/SRR22996054/SRR22996054_2.fastq.gz | 0961e8b7271b45be9a83919099a47052 | 839994521 | REF010 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR22996053 | PRJNA918839 | Mock3 (SRR22996053) | root | mock | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR22996053 | https://www.ebi.ac.uk/ena/browser/view/SRR22996053 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-924/SRR022/22996/SRR22996053/SRR22996053.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/053/SRR22996053/SRR22996053_1.fastq.gz | 537eb9e87a7c62859b66fbd141112267 | 869210319 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR229/053/SRR22996053/SRR22996053_2.fastq.gz | e94cc5ad26a4ba3a2bbea4da68977a32 | 907819458 | REF010 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR23357772 | PRJNA931633 | LAT1 (SRR23357772) | laticifer tissue | development/tissue | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357772 | https://www.ebi.ac.uk/ena/browser/view/SRR23357772 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357772/SRR23357772.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/072/SRR23357772/SRR23357772_1.fastq.gz | 26f1826f7a7b253482b6f5cdebaf23dd | 2129584267 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/072/SRR23357772/SRR23357772_2.fastq.gz | adf70addebec112079c0a56b6298b7c2 | 2185263261 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357771 | PRJNA931633 | LAT2 (SRR23357771) | laticifer tissue | development/tissue | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357771 | https://www.ebi.ac.uk/ena/browser/view/SRR23357771 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357771/SRR23357771.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/071/SRR23357771/SRR23357771_1.fastq.gz | e05b041949471162ac0389ab82e27466 | 1672767842 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/071/SRR23357771/SRR23357771_2.fastq.gz | def1d4db81ff64287e0a4ea6a8fc0e32 | 1734534966 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357770 | PRJNA931633 | LAT3 (SRR23357770) | laticifer tissue | development/tissue | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357770 | https://www.ebi.ac.uk/ena/browser/view/SRR23357770 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357770/SRR23357770.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/070/SRR23357770/SRR23357770_1.fastq.gz | 5dfa4fabe53fbf1c8cfbdcbc953e49bf | 1708918417 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/070/SRR23357770/SRR23357770_2.fastq.gz | 2d35883766273cefbb1abf973705f659 | 1778780254 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357769 | PRJNA931633 | LEV1 (SRR23357769) | leaf | development/tissue | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357769 | https://www.ebi.ac.uk/ena/browser/view/SRR23357769 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357769/SRR23357769.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/069/SRR23357769/SRR23357769_1.fastq.gz | d7b3ef6d38735520d0244d0ba1d24dcc | 1745999979 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/069/SRR23357769/SRR23357769_2.fastq.gz | fcb722e04409880b6c216be5081b6bca | 1814540277 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357768 | PRJNA931633 | LEV2 (SRR23357768) | leaf | development/tissue | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357768 | https://www.ebi.ac.uk/ena/browser/view/SRR23357768 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357768/SRR23357768.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/068/SRR23357768/SRR23357768_1.fastq.gz | 61565a6677859c77024fdd5af3332cd5 | 2160863162 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/068/SRR23357768/SRR23357768_2.fastq.gz | cdbfbef690fff2891c06c57518572130 | 2262883554 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357767 | PRJNA931633 | LEV3 (SRR23357767) | leaf | development/tissue | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357767 | https://www.ebi.ac.uk/ena/browser/view/SRR23357767 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357767/SRR23357767.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/067/SRR23357767/SRR23357767_1.fastq.gz | 47dcb1c4dbb0f484a9763842ab985a24 | 1587808890 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/067/SRR23357767/SRR23357767_2.fastq.gz | 3d43591be3eb44f56606193945ed9a1d | 1634587847 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357766 | PRJNA931633 | ROO1 (SRR23357766) | root | development/tissue | metadata unavailable | 1 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357766 | https://www.ebi.ac.uk/ena/browser/view/SRR23357766 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357766/SRR23357766.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/066/SRR23357766/SRR23357766_1.fastq.gz | ac06c7425977f2a29e2a2aa4273e1e52 | 2217305978 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/066/SRR23357766/SRR23357766_2.fastq.gz | 90767732161b21a31d9bc65cc5dc2d2a | 2304951814 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357765 | PRJNA931633 | ROO2 (SRR23357765) | root | development/tissue | metadata unavailable | 2 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357765 | https://www.ebi.ac.uk/ena/browser/view/SRR23357765 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357765/SRR23357765.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/065/SRR23357765/SRR23357765_1.fastq.gz | 4fcfc80fa38a1487b7e12fa6600c6d40 | 1725978192 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/065/SRR23357765/SRR23357765_2.fastq.gz | 0dea1260c0a3912c28f8eb4221259ba2 | 1792723912 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR23357764 | PRJNA931633 | ROO3 (SRR23357764) | root | development/tissue | metadata unavailable | 3 | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR23357764 | https://www.ebi.ac.uk/ena/browser/view/SRR23357764 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos13/sra-pub-zq-1303/SRR023/23357/SRR23357764/SRR23357764.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/064/SRR23357764/SRR23357764_1.fastq.gz | f7e665239c587ea856d741565beee45c | 2182103291 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR233/064/SRR23357764/SRR23357764_2.fastq.gz | 77c16a89c3aca4f2606170e14000dc45 | 2325187089 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | ||||||||
| RNA-seq | SRR24968334 | PRJNA985648 | NIL (SRR24968334) | metadata unavailable | material comparison | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR24968334 | https://www.ebi.ac.uk/ena/browser/view/SRR24968334 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR024/24968/SRR24968334/SRR24968334.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR249/034/SRR24968334/SRR24968334_1.fastq.gz | 47c1faf618bb5a49add00a61e98be4e6 | 3159004065 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR249/034/SRR24968334/SRR24968334_2.fastq.gz | 576d051370b47291efa0f60755e39387 | 3159939075 | REF011 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| RNA-seq | SRR24968335 | PRJNA985648 | VB263 (SRR24968335) | metadata unavailable | material comparison | metadata unavailable | metadata unavailable | Taraxacum kok-saghyz | True | https://www.ncbi.nlm.nih.gov/sra/SRR24968335 | https://www.ebi.ac.uk/ena/browser/view/SRR24968335 | https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR024/24968/SRR24968335/SRR24968335.lite.1 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR249/035/SRR24968335/SRR24968335_1.fastq.gz | f68c221309257dd959c3ca0eff9b2960 | 2916016069 | https://ftp.sra.ebi.ac.uk/vol1/fastq/SRR249/035/SRR24968335/SRR24968335_2.fastq.gz | 142d163589c50d89e46f1b4460a70696 | 2917328603 | REF011 | Official ENA filereport checked on 2026-10-03 and retained NCBI RunInfo archive download paths | Unrecorded time points and replicates are not inferred. Blank ENA fields indicate no link supplied by the checked mirror. Listed URLs do not establish that every file was downloaded again | |||||||
| Whole-genome resequencing | CRR618483 | PRJCA013324 | 164L | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618483 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618483/CRR618483_f1.fq.gz | f6006f3f652c7bc90f0d138fb10b744c | 4583549727 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618483/CRR618483_r2.fq.gz | d1e193e6e5041b1211ee28f3aead7cd9 | 4661991970 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997244 | CRX553401 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618483_f1.fq.gz | CRR618483_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618484 | PRJCA013324 | X5H | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618484 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618484/CRR618484_f1.fq.gz | 3da86764ea2546e7490c10c128a2bb9b | 4722589508 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618484/CRR618484_r2.fq.gz | f0c225d0ddbc87302f6bd4f690479968 | 4863419550 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997245 | CRX553402 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618484_f1.fq.gz | CRR618484_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618485 | PRJCA013324 | F1-1 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618485 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618485/CRR618485_f1.fq.gz | 1f74f0768b69d10030efab7dea7bb064 | 2214523511 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618485/CRR618485_r2.fq.gz | 5ae0e1d817906c7799b81658a0ee9fc6 | 2258633801 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997246 | CRX553403 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618485_f1.fq.gz | CRR618485_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618486 | PRJCA013324 | F1-2 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618486 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618486/CRR618486_f1.fq.gz | c89d09dbd7cf8d6b92088f8f8a155b7d | 2222453963 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618486/CRR618486_r2.fq.gz | c92203ef64966657393e345ff24893e6 | 2262259360 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997247 | CRX553404 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618486_f1.fq.gz | CRR618486_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618487 | PRJCA013324 | F1-5 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618487 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618487/CRR618487_f1.fq.gz | a04c03b2c0f71e3dd2c711544aafda6e | 2966453241 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618487/CRR618487_r2.fq.gz | b0a4fa0e4acbd5ef4cdb44e670408804 | 3051093900 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997248 | CRX553405 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618487_f1.fq.gz | CRR618487_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618488 | PRJCA013324 | F1-6 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618488 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618488/CRR618488_f1.fq.gz | a157853be5fe0e6eac198c6efdb456d3 | 2707086497 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618488/CRR618488_r2.fq.gz | ff26807b4b2fbfc0eb9357fa0c8cc2bc | 2774014161 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997249 | CRX553406 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618488_f1.fq.gz | CRR618488_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618489 | PRJCA013324 | F1-8 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618489 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618489/CRR618489_f1.fq.gz | 5686d9a080dcde1f2685f23a7159e24a | 2094691300 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618489/CRR618489_r2.fq.gz | 0fb7767c361b5deccf45382dc3a5e988 | 2144311346 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997250 | CRX553407 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618489_f1.fq.gz | CRR618489_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618490 | PRJCA013324 | F1-9 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618490 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618490/CRR618490_f1.fq.gz | 5c3b222d982007e1e01583c54dc0dbd5 | 2040947092 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618490/CRR618490_r2.fq.gz | 414962095851467a8433dba2230d2793 | 2122918722 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997251 | CRX553408 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618490_f1.fq.gz | CRR618490_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618491 | PRJCA013324 | F1-10 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618491 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618491/CRR618491_f1.fq.gz | f4f99cff977accac1d8a708c4d559841 | 2259296974 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618491/CRR618491_r2.fq.gz | a712e1706fae1499e3c03449f0ff7b36 | 2327402602 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997252 | CRX553409 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618491_f1.fq.gz | CRR618491_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618492 | PRJCA013324 | F1-11 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618492 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618492/CRR618492_f1.fq.gz | c9ac5e90f5f683ebad5108ab7ca5a88a | 2190343749 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618492/CRR618492_r2.fq.gz | e6877e9a96faaa4b8c2e27cf4e02a51a | 2396620029 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997253 | CRX553410 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618492_f1.fq.gz | CRR618492_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618493 | PRJCA013324 | F1-12 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618493 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618493/CRR618493_f1.fq.gz | 64a9ee8475858e6113382ec64f609354 | 2451973410 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618493/CRR618493_r2.fq.gz | 86336167905489a327b13b43b9268482 | 2521923882 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997254 | CRX553411 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618493_f1.fq.gz | CRR618493_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618494 | PRJCA013324 | F1-13 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618494 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618494/CRR618494_f1.fq.gz | 678d7707053fd5e95fa94d5e329308fb | 2285667582 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618494/CRR618494_r2.fq.gz | c686ab4675b48a8376645de9f9e21c28 | 2350307556 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997255 | CRX553412 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618494_f1.fq.gz | CRR618494_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618495 | PRJCA013324 | F1-16 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618495 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618495/CRR618495_f1.fq.gz | eebce00f0b718c9f7938bb834fe97437 | 2482896841 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618495/CRR618495_r2.fq.gz | 1307f7533a6d67eaae553b0368726f1d | 2570357974 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997256 | CRX553413 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618495_f1.fq.gz | CRR618495_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618496 | PRJCA013324 | F1-19 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618496 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618496/CRR618496_f1.fq.gz | aa6987ce86443d8fcec1936d62b75999 | 2229974127 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618496/CRR618496_r2.fq.gz | e4edf8eaad1fce96bf757474876ff931 | 2304281553 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997257 | CRX553414 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618496_f1.fq.gz | CRR618496_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618497 | PRJCA013324 | F1-26 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618497 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618497/CRR618497_f1.fq.gz | 5200ae792e0cbd3b4658644f2b2f2467 | 2146364146 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618497/CRR618497_r2.fq.gz | 5f177ae4db297a03f5b7da7dcb47e775 | 2201296147 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997258 | CRX553415 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618497_f1.fq.gz | CRR618497_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618498 | PRJCA013324 | F1-29 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618498 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618498/CRR618498_f1.fq.gz | 840cb354258503d146c439d22218be04 | 2063982908 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618498/CRR618498_r2.fq.gz | 06e525ef0c80a65134b933b48c84c024 | 2118249190 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997259 | CRX553416 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618498_f1.fq.gz | CRR618498_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618499 | PRJCA013324 | F1-31 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618499 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618499/CRR618499_f1.fq.gz | 9844f7840c31720dabe610c941b6b26a | 2124273470 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618499/CRR618499_r2.fq.gz | 74e4d6db7c0fbd28084ce9b1fe2f6ffe | 2192821365 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997260 | CRX553417 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618499_f1.fq.gz | CRR618499_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618500 | PRJCA013324 | F1-32 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618500 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618500/CRR618500_f1.fq.gz | 5a34f54f91fa66ee385c2ef805f1df17 | 2612037435 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618500/CRR618500_r2.fq.gz | a70ef7520fb17948b41c362cbc171bed | 2689563637 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997261 | CRX553418 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618500_f1.fq.gz | CRR618500_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618501 | PRJCA013324 | F1-38 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618501 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618501/CRR618501_f1.fq.gz | 80e0aec955688ba0d74f73a62ac34a67 | 2472139686 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618501/CRR618501_r2.fq.gz | bd3eebeb7f105156ead9fe80cb581297 | 2520842660 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997262 | CRX553419 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618501_f1.fq.gz | CRR618501_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618502 | PRJCA013324 | F1-41 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618502 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618502/CRR618502_f1.fq.gz | 367ae51a813ec8cbb9b75c16f9e00c25 | 2469302363 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618502/CRR618502_r2.fq.gz | f37fe2069e22335cc24a3e1c3528d9c4 | 2526321219 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997263 | CRX553420 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618502_f1.fq.gz | CRR618502_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618503 | PRJCA013324 | F1-44 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618503 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618503/CRR618503_f1.fq.gz | 07d7ebaa1d7d7b55749629c46fb54d55 | 2334018089 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618503/CRR618503_r2.fq.gz | 326584b0727d005d472386db37ead18b | 2402196832 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997264 | CRX553421 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618503_f1.fq.gz | CRR618503_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618504 | PRJCA013324 | F1-45 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618504 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618504/CRR618504_f1.fq.gz | 7b5d88a078d55ea97dd1fe83813da867 | 2314997853 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618504/CRR618504_r2.fq.gz | 84aa83a58a30970905ca67e2b2ea098e | 2372539589 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997265 | CRX553422 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618504_f1.fq.gz | CRR618504_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618505 | PRJCA013324 | F1-46 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618505 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618505/CRR618505_f1.fq.gz | 061ed953b7e4a30b5bd1406a08072da2 | 2063847968 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618505/CRR618505_r2.fq.gz | b594e3d007a881cf0a9acbc7079f5236 | 2123092900 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997266 | CRX553423 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618505_f1.fq.gz | CRR618505_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618506 | PRJCA013324 | F1-48 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618506 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618506/CRR618506_f1.fq.gz | 588a81c8a308504eb76147dcad973ecf | 2326002389 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618506/CRR618506_r2.fq.gz | 2d0dc0fbb3e41e0dc21c8b14f4e2955e | 2410128743 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997267 | CRX553424 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618506_f1.fq.gz | CRR618506_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618507 | PRJCA013324 | F1-49 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618507 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618507/CRR618507_f1.fq.gz | 58bd72468a87cd3c68a08b9a739f470c | 2347820743 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618507/CRR618507_r2.fq.gz | 4d6e7d46cb587900cc7f430577937569 | 2402847817 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997268 | CRX553425 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618507_f1.fq.gz | CRR618507_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618508 | PRJCA013324 | F1-51 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618508 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618508/CRR618508_f1.fq.gz | 6c1302f883c759cacd2ba753416bb52b | 2102758495 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618508/CRR618508_r2.fq.gz | 3a511b8e9f560ff5e29195f7a8137986 | 2164561964 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997269 | CRX553426 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618508_f1.fq.gz | CRR618508_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618509 | PRJCA013324 | F1-53 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618509 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618509/CRR618509_f1.fq.gz | 5f13413f9ccd2b75eb1bc27b5db0c81d | 2286565053 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618509/CRR618509_r2.fq.gz | 69f4d265f78c3b023f67ee867f8b8aab | 2335445455 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997270 | CRX553427 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618509_f1.fq.gz | CRR618509_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618510 | PRJCA013324 | F1-55 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618510 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618510/CRR618510_f1.fq.gz | e0a5696620923394fc2875231624a55b | 2382844653 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618510/CRR618510_r2.fq.gz | a2639c5c7c8ddcdf41bb5284d40ac3f4 | 2438090264 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997271 | CRX553428 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618510_f1.fq.gz | CRR618510_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618511 | PRJCA013324 | F1-56 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618511 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618511/CRR618511_f1.fq.gz | f17efe83a8fb07eaa4d4d0d889386fc8 | 2365102674 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618511/CRR618511_r2.fq.gz | 99be58cc94b21711cb33f2f95143d72e | 2431920102 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997272 | CRX553429 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618511_f1.fq.gz | CRR618511_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618512 | PRJCA013324 | F1-58 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618512 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618512/CRR618512_f1.fq.gz | 1878e6709d8c029276422fc08e700fc1 | 2333555447 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618512/CRR618512_r2.fq.gz | 19fc4c4d93da9d8f273dc28bbaf4e89f | 2373213301 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997273 | CRX553430 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618512_f1.fq.gz | CRR618512_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618513 | PRJCA013324 | F1-61 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618513 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618513/CRR618513_f1.fq.gz | 7aa8dc4a900321cb617461b9b4d2b803 | 2326622027 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618513/CRR618513_r2.fq.gz | f1fa59696406ce3fc068b47ce4669d80 | 2376196623 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997274 | CRX553431 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618513_f1.fq.gz | CRR618513_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618514 | PRJCA013324 | F1-62 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618514 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618514/CRR618514_f1.fq.gz | 2323857a5e1904eb989d22ea2b9867cf | 2096678897 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618514/CRR618514_r2.fq.gz | bc305f3536e5c98a7b0c076fff154d2b | 2150917527 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997275 | CRX553432 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618514_f1.fq.gz | CRR618514_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618515 | PRJCA013324 | F1-63 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618515 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618515/CRR618515_f1.fq.gz | 04a579b76673c02ea69af6d135b98a60 | 2018557586 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618515/CRR618515_r2.fq.gz | 8cae4dd94d0c781e67866469008d5f5f | 2079924854 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997276 | CRX553433 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618515_f1.fq.gz | CRR618515_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618516 | PRJCA013324 | F1-64 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618516 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618516/CRR618516_f1.fq.gz | e341387f9e5c5dc7a34a4ad4fa448954 | 2303460362 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618516/CRR618516_r2.fq.gz | 2b35f35ce802ed2f2247c572561e09e2 | 2360887225 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997277 | CRX553434 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618516_f1.fq.gz | CRR618516_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618517 | PRJCA013324 | F1-65 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618517 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618517/CRR618517_f1.fq.gz | f193fa5677e27c8071e3a1905922c314 | 2245377264 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618517/CRR618517_r2.fq.gz | 419ce07e4ab4eb4c8c0301750a3e3331 | 2309082936 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997278 | CRX553435 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618517_f1.fq.gz | CRR618517_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618518 | PRJCA013324 | F1-66 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618518 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618518/CRR618518_f1.fq.gz | 837fb48f575f42911fe3beee15d97808 | 2296183257 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618518/CRR618518_r2.fq.gz | c6e7f7dab2c10cec644c19ab5e56391b | 2365929858 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997279 | CRX553436 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618518_f1.fq.gz | CRR618518_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618519 | PRJCA013324 | F1-68 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618519 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618519/CRR618519_f1.fq.gz | 3e35b0b244788f749932c336ebf13eec | 2124115238 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618519/CRR618519_r2.fq.gz | cb8d42d98699e6dd4b84f508d5665688 | 2179715812 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997280 | CRX553437 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618519_f1.fq.gz | CRR618519_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618520 | PRJCA013324 | F1-71 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618520 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618520/CRR618520_f1.fq.gz | a13048ff201e8e2f8a38fb1cecb8560d | 2176373783 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618520/CRR618520_r2.fq.gz | a47381826f5e210d97c07219c1a53135 | 2221835430 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997281 | CRX553438 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618520_f1.fq.gz | CRR618520_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618521 | PRJCA013324 | F1-72 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618521 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618521/CRR618521_f1.fq.gz | 4c3372d29803722902e8d622278b7f51 | 2431780818 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618521/CRR618521_r2.fq.gz | f7210132beba3545066842237a588a2d | 2500883692 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997282 | CRX553439 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618521_f1.fq.gz | CRR618521_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618522 | PRJCA013324 | F1-73 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618522 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618522/CRR618522_f1.fq.gz | 452c4c7d87d2c67679478382f7908624 | 2292010609 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618522/CRR618522_r2.fq.gz | 1b37821559be07fb52a02c7834c2ffbb | 2336846140 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997283 | CRX553440 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618522_f1.fq.gz | CRR618522_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618523 | PRJCA013324 | F1-74 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618523 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618523/CRR618523_f1.fq.gz | 2b5e617e3297a60c15c0535f9d53f473 | 2214639630 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618523/CRR618523_r2.fq.gz | 24aac2e4c2e856c915abecd99c8a8e41 | 2270507780 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997284 | CRX553441 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618523_f1.fq.gz | CRR618523_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618524 | PRJCA013324 | F1-75 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618524 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618524/CRR618524_f1.fq.gz | 4e1d6b0006e90d5691ae320c5d24aa53 | 2392941033 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618524/CRR618524_r2.fq.gz | d8265d6990018c1ae10c8e4bc09f34d3 | 2436866273 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997285 | CRX553442 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618524_f1.fq.gz | CRR618524_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618525 | PRJCA013324 | F1-76 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618525 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618525/CRR618525_f1.fq.gz | cd3a815d204202e74c793299fdf620b6 | 2314757449 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618525/CRR618525_r2.fq.gz | 71d44853fadea95520c8c53eaf6b7cb6 | 2371734099 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997286 | CRX553443 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618525_f1.fq.gz | CRR618525_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618526 | PRJCA013324 | F1-77 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618526 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618526/CRR618526_f1.fq.gz | ea26160da8e9b221283aabe48e2c5b7c | 2090393409 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618526/CRR618526_r2.fq.gz | 59e34bc81e2a95f4597a353eab3a6f4e | 2154732644 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997287 | CRX553444 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618526_f1.fq.gz | CRR618526_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618527 | PRJCA013324 | F1-78 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618527 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618527/CRR618527_f1.fq.gz | 1c674460591809bc83c1ce2459e93b27 | 2066332473 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618527/CRR618527_r2.fq.gz | 2d1a63826b61802cf0c089c6490067d7 | 2119196879 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997288 | CRX553445 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618527_f1.fq.gz | CRR618527_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618528 | PRJCA013324 | F1-79 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618528 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618528/CRR618528_f1.fq.gz | 8d9bb54ef0eb1016df277bfa1059662e | 2016762530 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618528/CRR618528_r2.fq.gz | 6554e18f988d26d407244777b7468354 | 2056810078 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997289 | CRX553446 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618528_f1.fq.gz | CRR618528_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618529 | PRJCA013324 | F1-80 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618529 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618529/CRR618529_f1.fq.gz | dc7401beebdeb9d61f25f7a5721ee29b | 2276708643 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618529/CRR618529_r2.fq.gz | fd91e52e851ccc67e1fc4f7f0fb9e141 | 2332560708 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997290 | CRX553447 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618529_f1.fq.gz | CRR618529_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618530 | PRJCA013324 | F1-81 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618530 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618530/CRR618530_f1.fq.gz | 4711058b5d348e6c917e6bf05ecaf851 | 2218682517 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618530/CRR618530_r2.fq.gz | b99c63eebfbc91a823648d421c74ef32 | 2283828200 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997291 | CRX553448 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618530_f1.fq.gz | CRR618530_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618531 | PRJCA013324 | F1-82 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618531 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618531/CRR618531_f1.fq.gz | 919451a2c50789f573a533acc9b262ed | 2241901041 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618531/CRR618531_r2.fq.gz | e6500603dc1c3d51616ae08641ed6666 | 2288886044 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997292 | CRX553449 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618531_f1.fq.gz | CRR618531_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618532 | PRJCA013324 | F1-83 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618532 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618532/CRR618532_f1.fq.gz | 51f9dfc6912c9b6300102c89484c3d62 | 2278681406 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618532/CRR618532_r2.fq.gz | 8ba4087dc7f2dda120c3508ce91e6744 | 2327248894 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997293 | CRX553450 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618532_f1.fq.gz | CRR618532_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618533 | PRJCA013324 | F1-84 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618533 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618533/CRR618533_f1.fq.gz | 29e254c8402db4ad95db9ea5e296c2d9 | 2248022464 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618533/CRR618533_r2.fq.gz | c7a57cc38c38dae511500df3ada66029 | 2334225935 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997294 | CRX553451 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618533_f1.fq.gz | CRR618533_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618534 | PRJCA013324 | F1-85 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618534 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618534/CRR618534_f1.fq.gz | 6163b81cd63b1744443d2767b18ad4e0 | 2504191078 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618534/CRR618534_r2.fq.gz | c18a8aadccdefaeeaf2dace7c7a092a2 | 2592252626 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997295 | CRX553452 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618534_f1.fq.gz | CRR618534_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618535 | PRJCA013324 | F1-86 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618535 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618535/CRR618535_f1.fq.gz | 21e50ab6505678723ab1c93af0c194d9 | 2049769856 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618535/CRR618535_r2.fq.gz | fb988b710f30a5030e99586f27ad46f1 | 2099558379 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997296 | CRX553453 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618535_f1.fq.gz | CRR618535_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618536 | PRJCA013324 | F1-87 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618536 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618536/CRR618536_f1.fq.gz | 293a4793d9186bc6d0d36f6bd9207f99 | 2217916186 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618536/CRR618536_r2.fq.gz | 297c2ac472329578632a6834fc43d226 | 2281141824 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997297 | CRX553454 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618536_f1.fq.gz | CRR618536_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618537 | PRJCA013324 | F1-88 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618537 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618537/CRR618537_f1.fq.gz | 62c870f63d1c824862700b3235dba18d | 2353376016 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618537/CRR618537_r2.fq.gz | c14791095dc49aab8ac6350bb3a9e1c6 | 2437853733 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997298 | CRX553455 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618537_f1.fq.gz | CRR618537_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618538 | PRJCA013324 | F1-89 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618538 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618538/CRR618538_f1.fq.gz | 7399adb3d1dbadbae641ae7c65a6f760 | 2210444888 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618538/CRR618538_r2.fq.gz | d9e5fc3832b897dc7b1063748a6daa1c | 2283521982 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997299 | CRX553456 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618538_f1.fq.gz | CRR618538_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618539 | PRJCA013324 | F1-90 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618539 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618539/CRR618539_f1.fq.gz | 953fbf55ff8eb395801c7bc2dfa27d12 | 2443063038 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618539/CRR618539_r2.fq.gz | 5100de902c416438bfa29fb7f28778cc | 2527889005 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997300 | CRX553457 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618539_f1.fq.gz | CRR618539_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618540 | PRJCA013324 | F1-91 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618540 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618540/CRR618540_f1.fq.gz | 81c720c23081537d1b11c17b74bbeed7 | 2367861672 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618540/CRR618540_r2.fq.gz | ae5952c75eb102e03cfccbe8c8df5e00 | 2451540070 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997301 | CRX553458 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618540_f1.fq.gz | CRR618540_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618541 | PRJCA013324 | F1-92 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618541 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618541/CRR618541_f1.fq.gz | d165455ff5b9a5a59e2bf5d726445cff | 2420197699 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618541/CRR618541_r2.fq.gz | db930f31d07c3bc2b88694360a4c97cb | 2504024990 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997302 | CRX553459 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618541_f1.fq.gz | CRR618541_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618542 | PRJCA013324 | F1-93 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618542 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618542/CRR618542_f1.fq.gz | 550cb247182153d8938a0f69b0d5bb98 | 2111242831 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618542/CRR618542_r2.fq.gz | 0a369e06db93e0744985d28ad9a3b6f0 | 2177788723 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997303 | CRX553460 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618542_f1.fq.gz | CRR618542_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618543 | PRJCA013324 | F1-94 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618543 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618543/CRR618543_f1.fq.gz | 7a237d0970043de78b9acc75cd7dd10c | 2183350054 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618543/CRR618543_r2.fq.gz | d523846ab256a62912494ce59b42c0c1 | 2268215103 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997304 | CRX553461 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618543_f1.fq.gz | CRR618543_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618544 | PRJCA013324 | F1-95 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618544 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618544/CRR618544_f1.fq.gz | 65712c6e410232ce6b339d13ed54f54e | 2120472489 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618544/CRR618544_r2.fq.gz | c6f74b69dd21d7b283166b90e735513f | 2174572579 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997305 | CRX553462 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618544_f1.fq.gz | CRR618544_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618545 | PRJCA013324 | F1-96 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618545 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618545/CRR618545_f1.fq.gz | 4bb343802c96474e26b73b3c6bf53d08 | 2431097996 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618545/CRR618545_r2.fq.gz | 78d419a806a61f2b4f463db3ff18a31b | 2535367803 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997306 | CRX553463 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618545_f1.fq.gz | CRR618545_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618546 | PRJCA013324 | F1-97 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618546 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618546/CRR618546_f1.fq.gz | 2dfd265931b8d34fa729afd9826ff320 | 2384945798 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618546/CRR618546_r2.fq.gz | f561dd94584650d42abdd0b3490f53b4 | 2448675158 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997307 | CRX553464 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618546_f1.fq.gz | CRR618546_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618547 | PRJCA013324 | F1-98 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618547 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618547/CRR618547_f1.fq.gz | 420a4b35979b6d8a301244587f851e51 | 2155120422 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618547/CRR618547_r2.fq.gz | f2cf53b8616df4005e5bc2e196d4825c | 2231062760 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997308 | CRX553465 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618547_f1.fq.gz | CRR618547_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618548 | PRJCA013324 | F1-99 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618548 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618548/CRR618548_f1.fq.gz | 8c1537f240fb87467be6c6b09530f6ce | 2098594462 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618548/CRR618548_r2.fq.gz | c59dc9808af93e74ef5dce9c4b2c5114 | 2213065898 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997309 | CRX553466 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618548_f1.fq.gz | CRR618548_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618549 | PRJCA013324 | F1-100 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618549 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618549/CRR618549_f1.fq.gz | ef8ebde8241ec4f022875c8d017cccec | 2137889497 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618549/CRR618549_r2.fq.gz | f3493db147ffc94ce27fe5239d5d2ee2 | 2208151281 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997310 | CRX553467 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618549_f1.fq.gz | CRR618549_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618550 | PRJCA013324 | F1-101 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618550 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618550/CRR618550_f1.fq.gz | f266116d73cf309fa42747a038bfebb1 | 2118912355 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618550/CRR618550_r2.fq.gz | ba48894ef3ca9e6d9969a81a1b58ef02 | 2191627759 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997311 | CRX553468 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618550_f1.fq.gz | CRR618550_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618551 | PRJCA013324 | F1-102 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618551 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618551/CRR618551_f1.fq.gz | 89db994895c3817340ca5203389277c1 | 2257999503 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618551/CRR618551_r2.fq.gz | 2ec3edd1ef39347b33a7ec605829ff56 | 2327692945 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997312 | CRX553469 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618551_f1.fq.gz | CRR618551_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618552 | PRJCA013324 | F1-103 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618552 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618552/CRR618552_f1.fq.gz | dcf821f6a30bafd41b51da85b69a883c | 2130909332 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618552/CRR618552_r2.fq.gz | 95d2ca157fc92fdd1d39ea49383be51e | 2190674905 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997313 | CRX553470 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618552_f1.fq.gz | CRR618552_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618553 | PRJCA013324 | F1-104 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618553 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618553/CRR618553_f1.fq.gz | 28ca0c4259480f3ff19eac4ddc5a779a | 2113794405 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618553/CRR618553_r2.fq.gz | a13b50bbec0213a7d519cd95ccdbabce | 2188627400 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997314 | CRX553471 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618553_f1.fq.gz | CRR618553_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618554 | PRJCA013324 | F1-105 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618554 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618554/CRR618554_f1.fq.gz | 63f2a74c22fbae224376b223b7ed00ac | 2587896965 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618554/CRR618554_r2.fq.gz | 1745dcb7739c9047eead13a7c0cc5adf | 2687978207 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997315 | CRX553472 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618554_f1.fq.gz | CRR618554_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618555 | PRJCA013324 | F1-106 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618555 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618555/CRR618555_f1.fq.gz | d1dd0950149fec617246033569e636bc | 2046134131 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618555/CRR618555_r2.fq.gz | 13a2eeddcfd01ef68878cf9a698be2e1 | 2136619501 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997316 | CRX553473 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618555_f1.fq.gz | CRR618555_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618556 | PRJCA013324 | F1-107 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618556 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618556/CRR618556_f1.fq.gz | 2036d0bf5758dab487652777c5a71755 | 2774524990 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618556/CRR618556_r2.fq.gz | 74931a04113aa20acd8f0029844c890b | 2855250014 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997317 | CRX553474 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618556_f1.fq.gz | CRR618556_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618557 | PRJCA013324 | F1-108 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618557 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618557/CRR618557_f1.fq.gz | c5d8769df1d5f73958ece440e7319e85 | 2535797437 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618557/CRR618557_r2.fq.gz | fa96328af716fa319fa41dc6b3874e0e | 2637350979 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997318 | CRX553475 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618557_f1.fq.gz | CRR618557_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618558 | PRJCA013324 | F1-109 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618558 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618558/CRR618558_f1.fq.gz | f1b41c26bf0799aaf6bfaba6116700fa | 2468010343 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618558/CRR618558_r2.fq.gz | 8b341a946dced568e87cfd166954c655 | 2542765428 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997319 | CRX553476 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618558_f1.fq.gz | CRR618558_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618559 | PRJCA013324 | F1-110 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618559 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618559/CRR618559_f1.fq.gz | 8c0a85f3cabc388abf8ac4847d09f010 | 2269990998 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618559/CRR618559_r2.fq.gz | eed81b0dad1323d8586b90c1e8ea839e | 2343151291 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997320 | CRX553477 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618559_f1.fq.gz | CRR618559_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618560 | PRJCA013324 | F1-111 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618560 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618560/CRR618560_f1.fq.gz | 71d71a9cfe7773a4ce5dd19aa644a729 | 2756289213 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618560/CRR618560_r2.fq.gz | 1edc4ee0fa3a3317a42cd42e32fe3c80 | 2859550463 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997321 | CRX553478 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618560_f1.fq.gz | CRR618560_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618561 | PRJCA013324 | F1-112 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618561 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618561/CRR618561_f1.fq.gz | 25bc6ccec87d160c8d80e5a63d0b6d0a | 2168488344 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618561/CRR618561_r2.fq.gz | 5aaf856a1558f403f73a0548dfbe2fba | 2235837213 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997322 | CRX553479 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618561_f1.fq.gz | CRR618561_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618562 | PRJCA013324 | F1-113 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618562 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618562/CRR618562_f1.fq.gz | 55dfb6e55d929ff64bc195f3f40bb23b | 2437455994 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618562/CRR618562_r2.fq.gz | 9af75bd0d71142d41eb34f9160b2685f | 2512572927 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997323 | CRX553480 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618562_f1.fq.gz | CRR618562_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618563 | PRJCA013324 | F1-114 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618563 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618563/CRR618563_f1.fq.gz | 545e48c93150e5016a9b96820cb4f101 | 2238793827 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618563/CRR618563_r2.fq.gz | e72671e885a3aa418327a33ff553dd34 | 2313443195 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997324 | CRX553481 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618563_f1.fq.gz | CRR618563_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618564 | PRJCA013324 | F1-115 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618564 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618564/CRR618564_f1.fq.gz | dfde81788908a6eecbfa8baeee6a855f | 2259326476 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618564/CRR618564_r2.fq.gz | f231f4e3e35b2aa303f5ef954437ad5e | 2332346670 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997325 | CRX553482 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618564_f1.fq.gz | CRR618564_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618565 | PRJCA013324 | F1-116 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618565 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618565/CRR618565_f1.fq.gz | d149e286cfcb4eacaeccb54247b21e30 | 2188911969 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618565/CRR618565_r2.fq.gz | dcf3887f097639308a57c5079a55be96 | 2259860742 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997326 | CRX553483 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618565_f1.fq.gz | CRR618565_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618566 | PRJCA013324 | F1-117 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618566 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618566/CRR618566_f1.fq.gz | ff33c1a08c4120dbc2ecd988ed42fe85 | 2537131661 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618566/CRR618566_r2.fq.gz | 42ddff70ea72047195fabf5472856e70 | 2644777573 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997327 | CRX553484 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618566_f1.fq.gz | CRR618566_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618567 | PRJCA013324 | F1-118 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618567 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618567/CRR618567_f1.fq.gz | cab5a5ef114a11d69a01ee8725458f9b | 2436147827 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618567/CRR618567_r2.fq.gz | fa64f9129b13b0c9e32762717c60fe80 | 2558699739 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997328 | CRX553485 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618567_f1.fq.gz | CRR618567_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618568 | PRJCA013324 | F1-119 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618568 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618568/CRR618568_f1.fq.gz | 8fd1fc2ca177e0dd47bcf9b796d88eee | 2678220057 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618568/CRR618568_r2.fq.gz | d47838a585bb0a4a23bff86c0e43b5a9 | 2783127898 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997329 | CRX553486 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618568_f1.fq.gz | CRR618568_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618569 | PRJCA013324 | F1-120 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618569 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618569/CRR618569_f1.fq.gz | fa31687475bb5c4af4df3bc4aee19559 | 2164714912 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618569/CRR618569_r2.fq.gz | 632d801116d4b4a671e37119a4da2f7c | 2248497666 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997330 | CRX553487 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618569_f1.fq.gz | CRR618569_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618570 | PRJCA013324 | F1-121 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618570 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618570/CRR618570_f1.fq.gz | 6b812841887516aefc458e3a5c57c207 | 2485660888 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618570/CRR618570_r2.fq.gz | c400e9c2a4216b94aecc4a3a4248444b | 2588373014 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997331 | CRX553488 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618570_f1.fq.gz | CRR618570_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618571 | PRJCA013324 | F1-122 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618571 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618571/CRR618571_f1.fq.gz | 23952e10ba5c4d8a3295b898e6675cb5 | 2246131945 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618571/CRR618571_r2.fq.gz | 6588ccf2db7ed9ddd5d58f22d0df6760 | 2331811202 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997332 | CRX553489 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618571_f1.fq.gz | CRR618571_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618572 | PRJCA013324 | F1-123 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618572 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618572/CRR618572_f1.fq.gz | 17af2e4dd6ddf39af08a3596b23a7d74 | 2267413464 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618572/CRR618572_r2.fq.gz | b743dd3e8945fadf2245022a56aeb7e4 | 2360764344 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997333 | CRX553490 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618572_f1.fq.gz | CRR618572_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618573 | PRJCA013324 | F1-124 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618573 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618573/CRR618573_f1.fq.gz | b53d9687e1b9be6be65c9429399c0dc3 | 2099407827 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618573/CRR618573_r2.fq.gz | a62751fe187b4bb7f81a62b614bde20c | 2180658006 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997334 | CRX553491 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618573_f1.fq.gz | CRR618573_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618574 | PRJCA013324 | F1-125 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618574 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618574/CRR618574_f1.fq.gz | d556be5577cfadf9dfe7fdbc89fbcbd5 | 2282049372 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618574/CRR618574_r2.fq.gz | 5e538a6c9f837fa5ea8b4a56c8e33dea | 2334070076 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997335 | CRX553492 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618574_f1.fq.gz | CRR618574_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618575 | PRJCA013324 | F1-126 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618575 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618575/CRR618575_f1.fq.gz | 70345f20d459761aab88eb260e22a3e4 | 2587794045 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618575/CRR618575_r2.fq.gz | c03ac94f6cdaeef28560f238c4a10577 | 2718006726 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997336 | CRX553493 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618575_f1.fq.gz | CRR618575_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618576 | PRJCA013324 | F1-127 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618576 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618576/CRR618576_f1.fq.gz | 0314d62100f6380c184a22b8d6b2559d | 2135566749 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618576/CRR618576_r2.fq.gz | d3b1be5fad427002143c2937825bbd5c | 2203443336 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997337 | CRX553494 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618576_f1.fq.gz | CRR618576_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618577 | PRJCA013324 | F1-128 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618577 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618577/CRR618577_f1.fq.gz | 0d258476063f6e6863c954a69f5e175e | 2441196379 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618577/CRR618577_r2.fq.gz | 3197dfd5e4c1e0822f22aeab6da70a81 | 2538050893 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997338 | CRX553495 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618577_f1.fq.gz | CRR618577_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618578 | PRJCA013324 | F1-129 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618578 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618578/CRR618578_f1.fq.gz | db726991bb1eea07a19dbdaa21d3de20 | 2409584278 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618578/CRR618578_r2.fq.gz | f03701edcef3bd74604a93c01851567c | 2475294951 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997339 | CRX553496 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618578_f1.fq.gz | CRR618578_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618579 | PRJCA013324 | F1-130 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618579 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618579/CRR618579_f1.fq.gz | 5bf8c2a641fb7a26f4999eda7b72bf86 | 2154762786 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618579/CRR618579_r2.fq.gz | c533ad64e0f0b5e199ce00cd4d8a6688 | 2234273116 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997340 | CRX553497 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618579_f1.fq.gz | CRR618579_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618580 | PRJCA013324 | F1-131 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618580 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618580/CRR618580_f1.fq.gz | 7f6cdedeea33eed47d8d1994f687c958 | 2379958687 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618580/CRR618580_r2.fq.gz | 25c3eb28a5ad995e58c2ada447f9c7d8 | 2467522427 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997341 | CRX553498 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618580_f1.fq.gz | CRR618580_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618581 | PRJCA013324 | F1-132 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618581 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618581/CRR618581_f1.fq.gz | 1e77f6607598a3f33f2c047ca7211631 | 2381124335 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618581/CRR618581_r2.fq.gz | 9384dd2ce858b6c46cca68751ec48808 | 2503157985 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997342 | CRX553499 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618581_f1.fq.gz | CRR618581_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618582 | PRJCA013324 | F1-133 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618582 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618582/CRR618582_f1.fq.gz | 2f4232170140191020977a2b68105311 | 2786910816 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618582/CRR618582_r2.fq.gz | 4982ef649c56bd19a0776b932d07186c | 2877991584 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997343 | CRX553500 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618582_f1.fq.gz | CRR618582_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618583 | PRJCA013324 | F1-134 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618583 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618583/CRR618583_f1.fq.gz | c1e911f8e9723dc2ca8a687046799089 | 2129393768 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618583/CRR618583_r2.fq.gz | b9ecb348df215997ccbbc26d532db53f | 2325676113 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997344 | CRX553501 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618583_f1.fq.gz | CRR618583_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618584 | PRJCA013324 | F1-135 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618584 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618584/CRR618584_f1.fq.gz | 396ce36024226e45dec330af6530b8fd | 2670705371 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618584/CRR618584_r2.fq.gz | d27d99c092f099477bd553c5d6b96127 | 2763506726 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997345 | CRX553502 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618584_f1.fq.gz | CRR618584_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618585 | PRJCA013324 | F1-136 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618585 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618585/CRR618585_f1.fq.gz | 1d399c31c99445e9f95ed80974022941 | 2359903946 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618585/CRR618585_r2.fq.gz | 74f24fcfdc438c95aeb6a22f5eae6a84 | 2462828455 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997346 | CRX553503 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618585_f1.fq.gz | CRR618585_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618586 | PRJCA013324 | F1-137 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618586 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618586/CRR618586_f1.fq.gz | 911e7db42dc27c6a92d9ee4d42f696ec | 2280767720 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618586/CRR618586_r2.fq.gz | 62dc1e53785608bd1fc3ed762fe93545 | 2389541407 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997347 | CRX553504 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618586_f1.fq.gz | CRR618586_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618587 | PRJCA013324 | F1-138 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618587 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618587/CRR618587_f1.fq.gz | a054046e44a5eb03b76fef73293090e0 | 2321842587 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618587/CRR618587_r2.fq.gz | bc51f62a85dee37c2d6ac74cab9a349c | 2394792997 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997348 | CRX553505 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618587_f1.fq.gz | CRR618587_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618588 | PRJCA013324 | F1-139 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618588 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618588/CRR618588_f1.fq.gz | 5e097c658bc8c6eb720e42a7914b5855 | 2587718756 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618588/CRR618588_r2.fq.gz | a6999662230517740d56e62f9bc5bd3b | 2677791141 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997349 | CRX553506 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618588_f1.fq.gz | CRR618588_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618589 | PRJCA013324 | F1-140 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618589 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618589/CRR618589_f1.fq.gz | f76cac6c2b8ecd3e3a60f27ae9b9a18f | 2221054386 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618589/CRR618589_r2.fq.gz | efee169257699bde505eeb1cf6953318 | 2305619715 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997350 | CRX553507 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618589_f1.fq.gz | CRR618589_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618590 | PRJCA013324 | F1-141 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618590 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618590/CRR618590_f1.fq.gz | 191d01a1a83d20d51d60a6ddf92db3c6 | 2253634471 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618590/CRR618590_r2.fq.gz | 498dbd59fe5e151c1c55eef534f46db9 | 2378237545 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997351 | CRX553508 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618590_f1.fq.gz | CRR618590_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618591 | PRJCA013324 | F1-142 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618591 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618591/CRR618591_f1.fq.gz | 38de75d1c9f24961057732d1d0bbcd38 | 2298591656 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618591/CRR618591_r2.fq.gz | e8b460dd698d07d20fae80ef31a5874f | 2385150284 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997352 | CRX553509 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618591_f1.fq.gz | CRR618591_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618592 | PRJCA013324 | F1-143 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618592 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618592/CRR618592_f1.fq.gz | 9cb0d9ff659e94c92baf627043aac2ac | 2327603108 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618592/CRR618592_r2.fq.gz | b9e66c85944b21650f4e8a2c0fca8f1d | 2411010165 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997353 | CRX553510 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618592_f1.fq.gz | CRR618592_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618593 | PRJCA013324 | F1-144 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618593 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618593/CRR618593_f1.fq.gz | e7c569d004009543faee405ae8f3ef90 | 2278553702 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618593/CRR618593_r2.fq.gz | 0d7fd36ddddb73adc2e682c215f3727c | 2364090994 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997354 | CRX553511 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618593_f1.fq.gz | CRR618593_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618594 | PRJCA013324 | F1-145 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618594 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618594/CRR618594_f1.fq.gz | 97e98861782a7e756b3b4b744d5d6534 | 2238200619 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618594/CRR618594_r2.fq.gz | 1b0b0d4ead85fb063d2647acfa1e57b8 | 2352591987 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997355 | CRX553512 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618594_f1.fq.gz | CRR618594_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618595 | PRJCA013324 | F1-146 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618595 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618595/CRR618595_f1.fq.gz | 6e871209c6e9576af47a165b569e2ae6 | 2144789537 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618595/CRR618595_r2.fq.gz | 2eb98e18eed1f9befbf45988c45bbab1 | 2230344199 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997356 | CRX553513 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618595_f1.fq.gz | CRR618595_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618596 | PRJCA013324 | F1-147 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618596 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618596/CRR618596_f1.fq.gz | 0261c4d74fa94de602431c372f6ad7dd | 2098606569 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618596/CRR618596_r2.fq.gz | bb7195ec7b3647452d08073f861a890c | 2191831631 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997357 | CRX553514 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618596_f1.fq.gz | CRR618596_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618597 | PRJCA013324 | F1-148 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618597 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618597/CRR618597_f1.fq.gz | 4a84afe2b6a070a4d40320c21a270cf4 | 2514621755 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618597/CRR618597_r2.fq.gz | 12ab7b5679fb09b1fe183e564e1f8ecb | 2642134828 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997358 | CRX553515 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618597_f1.fq.gz | CRR618597_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618598 | PRJCA013324 | F1-149 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618598 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618598/CRR618598_f1.fq.gz | 3618fe6b086a2aebd61a712f298cfee6 | 2388430387 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618598/CRR618598_r2.fq.gz | fff09e46c67f09559f685c5cd11e48aa | 2494219773 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997359 | CRX553516 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618598_f1.fq.gz | CRR618598_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618599 | PRJCA013324 | F1-7 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618599 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618599/CRR618599_f1.fq.gz | d0f5bf12aa2cbfc4bc24afcb0e2b4810 | 2302280831 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618599/CRR618599_r2.fq.gz | 561df2cce116cf2dbe1a1267b1771ad7 | 2450155422 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997360 | CRX553517 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618599_f1.fq.gz | CRR618599_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618600 | PRJCA013324 | F1-15 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618600 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618600/CRR618600_f1.fq.gz | ac93c8fa3d50f105db01342ade2f0bd8 | 2483691049 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618600/CRR618600_r2.fq.gz | 9c0b3667655aa4effb262dbda8376bb1 | 2618457404 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997361 | CRX553518 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618600_f1.fq.gz | CRR618600_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618601 | PRJCA013324 | F1-18 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618601 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618601/CRR618601_f1.fq.gz | 20072df03ea58dc2b137eca3f7273a20 | 2471666712 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618601/CRR618601_r2.fq.gz | c0f339ea4592a470d065b39a2538b87d | 2575877346 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997362 | CRX553519 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618601_f1.fq.gz | CRR618601_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618602 | PRJCA013324 | F1-20 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618602 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618602/CRR618602_f1.fq.gz | 3515d13482a5a77c4b7fcf74b3836448 | 2069194250 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618602/CRR618602_r2.fq.gz | dd0c7db7ae8c4e283b102fc4256d7606 | 2125069969 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997363 | CRX553520 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618602_f1.fq.gz | CRR618602_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618603 | PRJCA013324 | F1-21 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618603 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618603/CRR618603_f1.fq.gz | 864a2695e3d396e70b366aa182cd00b8 | 2686936906 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618603/CRR618603_r2.fq.gz | d260065274469eaed50eec03c6e6a4aa | 2773743682 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997364 | CRX553521 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618603_f1.fq.gz | CRR618603_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618604 | PRJCA013324 | F1-30 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618604 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618604/CRR618604_f1.fq.gz | f617fb6656da153fb86afe715b907250 | 2626403275 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618604/CRR618604_r2.fq.gz | a51958c872791adce89a897ecd096bbd | 2742591993 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997365 | CRX553522 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618604_f1.fq.gz | CRR618604_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618605 | PRJCA013324 | F1-33 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618605 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618605/CRR618605_f1.fq.gz | 1f5918c37a418c3e6b0a760b697acafc | 2435270336 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618605/CRR618605_r2.fq.gz | a7b4c7cbab099ac66152ceceb0cbd790 | 2559335856 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997366 | CRX553523 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618605_f1.fq.gz | CRR618605_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618606 | PRJCA013324 | F1-34 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618606 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618606/CRR618606_f1.fq.gz | 26497e088c4f89ece23310ef6bf8bd68 | 2517285357 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618606/CRR618606_r2.fq.gz | 8d1717ee8fea4ccc87e715ec6600384f | 2658944090 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997367 | CRX553524 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618606_f1.fq.gz | CRR618606_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618607 | PRJCA013324 | F1-36 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618607 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618607/CRR618607_f1.fq.gz | 9749d10b2ff056913f50bdd768b368bf | 2079978166 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618607/CRR618607_r2.fq.gz | 01f51bb016fed4d62c6cae45cd96c0e8 | 2172537903 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997368 | CRX553525 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618607_f1.fq.gz | CRR618607_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618608 | PRJCA013324 | F1-37 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618608 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618608/CRR618608_f1.fq.gz | 15b051afb83684de7b57f5bd56db00c8 | 2290975011 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618608/CRR618608_r2.fq.gz | b0bce43517885fa6c1137dadb70474d2 | 2374891769 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997369 | CRX553526 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618608_f1.fq.gz | CRR618608_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618609 | PRJCA013324 | F1-40 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618609 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618609/CRR618609_f1.fq.gz | db42db8563ee212398b724147bc66925 | 2186164607 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618609/CRR618609_r2.fq.gz | 6855616147cc3220cf15943d8a831dfc | 2304273340 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997370 | CRX553527 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618609_f1.fq.gz | CRR618609_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618610 | PRJCA013324 | F1-42 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618610 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618610/CRR618610_f1.fq.gz | 104452636f68fd78d228952824ce80a5 | 2411688143 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618610/CRR618610_r2.fq.gz | 07a7cdb9ce72c3cd8b5a9bb6bb0a7e6d | 2523743917 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997371 | CRX553528 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618610_f1.fq.gz | CRR618610_r2.fq.gz | |||||||
| Whole-genome resequencing | CRR618611 | PRJCA013324 | F1-43 | leaf | Taraxacum kok-saghyz | https://ngdc.cncb.ac.cn/gsa/browse/CRA009020/CRR618611 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618611/CRR618611_f1.fq.gz | 320db3d52a98f68c2600ae7c6a239ba5 | 2475704404 | https://download.cncb.ac.cn/gsa2/CRA009020/CRR618611/CRR618611_r2.fq.gz | 63002b24521c6e652c9100ca8048e21a | 2567077039 | REF013 | 129 runs represent 129 biological samples; alignment to two references does not increase the biological sample count | SAMC997372 | CRX553529 | Illumina NovaSeq 6000 | WGS | PAIRED | CRR618611_f1.fq.gz | CRR618611_r2.fq.gz |
S3 Software and Databases
Download table TSV | Back to contents
| Category | Resource ID | Resource name | Used version or status | Website application | Use relationship | Official URL | Source-code URL | Software download URL | Model download URL | Reference ID | Paper title | Publication year | DOI | Paper URL | Paper relationship | Limitations |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Software or website algorithm | LocPro | LocPro | Offline bundle; upstream semantic version not recorded | Direct localization predictions for representative OH-1004 and TK1151 proteins using ESM2 and PROFEAT features | Used by the website or supplied as a component | https://idrblab.org/LocPro/ | https://github.com/idrblab/LocPro | https://drive.google.com/drive/folders/1twlsmrQRBF7gFMG97tnH0HxzjvExyfsA | https://drive.google.com/drive/folders/1twlsmrQRBF7gFMG97tnH0HxzjvExyfsA | REF014 | LocPro: A deep learning-based prediction of protein subcellular localization for promoting multi-directional pharmaceutical research | 2025 | 10.1016/j.jpha.2025.101255 | https://doi.org/10.1016/j.jpha.2025.101255 | Software methods publication | Computational prediction; no microscopy or experimental localization claimed |
| Software or website algorithm | ESM2 | ESM2 | LocPro-bundled model; checkpoint revision not recorded | Protein language-model features for LocPro | Used by the website or supplied as a component | https://github.com/facebookresearch/esm | https://github.com/facebookresearch/esm | https://github.com/facebookresearch/esm | REF015 | Evolutionary-scale prediction of atomic-level protein structure with a language model | 2023 | 10.1126/science.ade2574 | https://doi.org/10.1126/science.ade2574 | Software methods publication | LocPro component, rather than a standalone localization predictor | |
| Software or website algorithm | PROFEAT (sequence features; LocPro reference) | PROFEAT (sequence features; LocPro reference) | Feature implementation in the LocPro offline bundle; standalone version not recorded | Sequence physicochemical features for LocPro | Used by the website or supplied as a component | https://doi.org/10.1093/nar/gkr284 | REF016 | Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence | 2011 | 10.1093/nar/gkr284 | https://doi.org/10.1093/nar/gkr284 | Software methods publication | Publication and official software source verified; distinct from similarly named network-feature tools | |||
| Software or website algorithm | HISAT2 | HISAT2 | 2.2.1 | RNA-seq alignment to the TK1151 reference | Used by the website or supplied as a component | https://daehwankimlab.github.io/hisat2/ | https://github.com/DaehwanKimLab/hisat2/releases | https://github.com/DaehwanKimLab/hisat2/releases | REF017 | Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype | 2019 | 10.1038/s41587-019-0201-4 | https://doi.org/10.1038/s41587-019-0201-4 | Software methods publication | Installed executable version verified; parameters based on retained scripts | |
| Software or website algorithm | StringTie | StringTie | 3.0.3 | Fixed-model re-quantification of 109 samples using -e -G; coverage, FPKM and TPM | Used by the website or supplied as a component | https://ccb.jhu.edu/software/stringtie/ | https://github.com/gpertea/stringtie/releases | https://github.com/gpertea/stringtie/releases | REF018 | StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | 2015 | 10.1038/nbt.3122 | https://doi.org/10.1038/nbt.3122 | Software methods publication | Not featureCounts integer counts; 98,473 TKU-model genes | |
| Software or website algorithm | SAMtools | SAMtools | RNA pipeline: 1.13; variant pipeline: 1.20 | BAM/CRAM processing, sorting and indexing | Used by the website or supplied as a component | https://www.htslib.org/ | https://github.com/samtools/samtools/releases | https://github.com/samtools/samtools/releases | REF019 | Twelve years of SAMtools and BCFtools | 2021 | 10.1093/gigascience/giab008 | https://doi.org/10.1093/gigascience/giab008 | Software methods publication | The two execution environments are recorded separately | |
| Software or website algorithm | SRA Toolkit | SRA Toolkit | 3.4.1 | Retrieval of public SRA reads with fasterq-dump | Used by the website or supplied as a component | https://github.com/ncbi/sra-tools | https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit | https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Actual retained archive-download paths preserved | |||||
| Software or website algorithm | BLAST+ | BLAST+ | 2.12.0+ | Public BLAST searches, historical-ID sequence mapping and homology alignment | Used by the website or supplied as a component | https://blast.ncbi.nlm.nih.gov/ | https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ | https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ | REF020 | BLAST+: architecture and applications | 2009 | 10.1186/1471-2105-10-421 | https://doi.org/10.1186/1471-2105-10-421 | Software methods publication | Short-sequence alignment parameters controlled by the website | |
| Software or website algorithm | HMMER | HMMER | 3.3.2 | Pfam-A protein-domain scanning | Used by the website or supplied as a component | https://hmmer.org/ | https://hmmer.org/download.html | https://hmmer.org/download.html | REF021 | Accelerated Profile HMM Searches | 2011 | 10.1371/journal.pcbi.1002195 | https://doi.org/10.1371/journal.pcbi.1002195 | Software methods publication | Domain hits constitute computational evidence | |
| Software or website algorithm | FIMO | FIMO | 5.4.1 | Retained PlantTFDB/JASPAR motif scans of promoters | Used by the website or supplied as a component | https://meme-suite.org/meme/doc/fimo.html | https://meme-suite.org/meme/doc/download.html | https://meme-suite.org/meme/doc/download.html | REF022 | FIMO: scanning for occurrences of a given motif | 2011 | 10.1093/bioinformatics/btr064 | https://doi.org/10.1093/bioinformatics/btr064 | Software methods publication | Cached scans use 2500-bp promoters; current on-demand 4000-bp scans use the site-developed implementation | |
| Software or website algorithm | DIAMOND | DIAMOND | 2.2.4 | Protein homology, reference-version mapping and Swiss-Prot annotation transfer | Used by the website or supplied as a component | https://github.com/bbuchfink/diamond | https://github.com/bbuchfink/diamond/releases | https://github.com/bbuchfink/diamond/releases | REF023 | Sensitive protein alignments at tree-of-life scale using DIAMOND | 2021 | 10.1038/s41592-021-01101-x | https://doi.org/10.1038/s41592-021-01101-x | Software methods publication | Homology-based annotation does not establish experimental validation | |
| Software or website algorithm | JCVI | JCVI | 1.6.6 | Synteny and ortholog blocks between TK1151 and OH-1004 | Used by the website or supplied as a component | https://github.com/tanghaibao/jcvi | https://pypi.org/project/jcvi/ | https://pypi.org/project/jcvi/ | REF024 | JCVI: A versatile toolkit for comparative genomics analysis | 2024 | 10.1002/imt2.211 | https://doi.org/10.1002/imt2.211 | Software methods publication | Retained methods: -cscore 0.70 and diamond_blastp | |
| Software or website algorithm | minimap2 | minimap2 | 2.30-r1287 | Short-read realignment of CRA009020 using -ax sr --secondary=no | Used by the website or supplied as a component | https://github.com/lh3/minimap2 | https://github.com/lh3/minimap2/releases | https://github.com/lh3/minimap2/releases | REF025 | Minimap2: pairwise alignment for nucleotide sequences | 2018 | 10.1093/bioinformatics/bty191 | https://doi.org/10.1093/bioinformatics/bty191 | Software methods publication | Actual use of this tool verified; obsolete BWA preparation directories are not treated as the executed method | |
| Software or website algorithm | bcftools | bcftools | 1.20 | Variant mpileup, calling and filtering | Used by the website or supplied as a component | https://www.htslib.org/ | https://github.com/samtools/bcftools/releases | https://github.com/samtools/bcftools/releases | REF019 | Twelve years of SAMtools and BCFtools | 2021 | 10.1093/gigascience/giab008 | https://doi.org/10.1093/gigascience/giab008 | Software methods publication | Diploid assumption; QUAL>=30, DP>=10 and MQ/BQ>=20 | |
| Software or website algorithm | KMC3 | KMC3 | 3.2.1 | Resequencing k-mer counting | Used by the website or supplied as a component | https://github.com/refresh-bio/KMC | https://github.com/refresh-bio/KMC/releases | https://github.com/refresh-bio/KMC/releases | REF026 | KMC 3: counting and manipulating k-mer statistics | 2017 | 10.1093/bioinformatics/btx304 | https://doi.org/10.1093/bioinformatics/btx304 | Software methods publication | Installed executable version verified | |
| Software or website algorithm | MaxQuant (upstream source analysis) | MaxQuant (upstream source analysis) | Author-processed outputs retained by the website; version unconfirmed | Upstream proteomic processing of PXD011773 by the original authors | Used by the upstream authors | https://www.maxquant.org/maxquant/ | https://www.maxquant.org/archive/maxquant | https://www.maxquant.org/archive/maxquant | REF027 | MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification | 2008 | 10.1038/nbt.1511 | https://doi.org/10.1038/nbt.1511 | Software methods publication | Used by upstream authors; the website imports results and does not claim reanalysis of raw mass-spectrometry data | |
| Software or website algorithm | featureCounts | featureCounts | 2.0.3 | Retained independent integer-count data from nine MeJA samples and historical coexpression input | Used by the website or supplied as a component | https://subread.sourceforge.net/ | https://sourceforge.net/projects/subread/files/ | https://sourceforge.net/projects/subread/files/ | REF028 | featureCounts: an efficient general purpose program for assigning sequence reads to genomic features | 2014 | 10.1093/bioinformatics/btt656 | https://doi.org/10.1093/bioinformatics/btt656 | Software methods publication | Does not justify describing uniform-v4 coverage as integer counts | |
| Software or website algorithm | JBrowse 2 | JBrowse 2 | Major version 2; exact installed build not documented | Genome browser and source-model tracks | Used by the website or supplied as a component | https://jbrowse.org/jb2/ | https://github.com/GMOD/jbrowse-components/releases | https://github.com/GMOD/jbrowse-components/releases | REF029 | JBrowse 2: a modular genome browser with views of synteny and structural variation | 2023 | 10.1186/s13059-023-02914-z | https://doi.org/10.1186/s13059-023-02914-z | Software methods publication | Only the major version is confirmed; minor versions are not inferred | |
| Software or website algorithm | Python | Python | 3.10.12 (retained methods record) | Database import, website backend and site-developed algorithms | Used by the website or supplied as a component | https://www.python.org/ | https://www.python.org/downloads/ | https://www.python.org/downloads/ | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Historical methods record; not a claim that all current environments use the same version | |||||
| Software or website algorithm | Flask | Flask | Not recorded | Website backend | Used by the website or supplied as a component | https://flask.palletsprojects.com/ | https://flask.palletsprojects.com/en/stable/installation/ | https://flask.palletsprojects.com/en/stable/installation/ | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Official documentation; no specific software publication | |||||
| Software or website algorithm | Jinja2 | Jinja2 | Not recorded | Page-template rendering | Used by the website or supplied as a component | https://jinja.palletsprojects.com/ | https://jinja.palletsprojects.com/en/stable/intro/ | https://jinja.palletsprojects.com/en/stable/intro/ | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Official documentation; no specific software publication | |||||
| Software or website algorithm | SQLite | SQLite | Not recorded | Relational database storage | Used by the website or supplied as a component | https://sqlite.org/ | https://sqlite.org/download.html | https://sqlite.org/download.html | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Database engine; no specific software publication | |||||
| Software or website algorithm | NumPy | NumPy | Exact version not recorded | LocPro feature and array processing | Used by the website or supplied as a component | https://numpy.org/ | https://github.com/numpy/numpy | https://github.com/numpy/numpy/releases | REF030 | Array programming with NumPy | 2020 | 10.1038/s41586-020-2649-2 | https://doi.org/10.1038/s41586-020-2649-2 | Software methods publication | Computational dependency; not a separate localization method | |
| Software or website algorithm | pandas | pandas | 2.0.3 in the LocPro environment (retained methods record) | LocPro feature-table and result-table processing | Used by the website or supplied as a component | https://pandas.pydata.org/ | https://github.com/pandas-dev/pandas | https://github.com/pandas-dev/pandas/releases | REF031 | Data Structures for Statistical Computing in Python | 2010 | 10.25080/Majora-92bf1922-00a | https://doi.org/10.25080/Majora-92bf1922-00a | Software methods publication | Data-processing dependency | |
| Software or website algorithm | PyTorch | PyTorch | 2.4.1+cpu in the LocPro environment (retained methods record) | LocPro/ESM2 inference | Used by the website or supplied as a component | https://pytorch.org/ | https://github.com/pytorch/pytorch | https://pytorch.org/get-started/locally/ | REF032 | PyTorch: An Imperative Style, High-Performance Deep Learning Library | 2019 | https://proceedings.neurips.cc/paper/2019/hash/bdbca288fee7f92f2bfa9f7012727740-Abstract.html | Official technical documentation; no specific methods paper | No DOI confirmed for the framework paper; official NeurIPS publication URL retained | ||
| Software or website algorithm | Gunicorn | Gunicorn | Current system service; exact version not recorded | Python web-service worker processes | Used by the website or supplied as a component | https://gunicorn.org/ | https://github.com/benoitc/gunicorn | https://github.com/benoitc/gunicorn | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Does not provide independent biological evidence for algorithmic results | |||||
| Software or website algorithm | nginx | nginx | Software confirmed by the public HTTP response; exact build not recorded | Public reverse proxy and static-resource serving | Used by the website or supplied as a component | https://nginx.org/ | https://nginx.org/en/download.html | https://nginx.org/en/download.html | No explicitly associated publication identified | Official technical documentation; no specific methods paper | Website infrastructure; official documentation, with no specific software publication | |||||
| Software or website algorithm | SITE_QPCR | Website qPCR primer design | Website application source SHA256 4fa08ff3adc7b29f8f6c71b018b4d5757ef5ff83031e4067c490cc1ed68bf00a | rubber_qpcr.py: sequence enumeration, melting-temperature and GC filtering, and transcript/genome specificity checks | Site-developed algorithm | http://47.95.224.165/rubber/tools | Site-developed; no independent public source-code repository released | No standalone download package released | No explicitly associated publication identified | No independent software publication | Computational design suggestions; no use of Primer3 or CRISPOR, or experimental validation, claimed | |||||
| Software or website algorithm | SITE_CRISPR | Website CRISPR guide design | Website application source SHA256 4fa08ff3adc7b29f8f6c71b018b4d5757ef5ff83031e4067c490cc1ed68bf00a | rubber_crispr.py: candidate SpCas9 NGG sites and reference-sequence off-target scanning | Site-developed algorithm | http://47.95.224.165/rubber/tools | Site-developed; no independent public source-code repository released | No standalone download package released | No explicitly associated publication identified | No independent software publication | Computational design suggestions; no use of Primer3 or CRISPOR, or experimental validation, claimed | |||||
| Software or website algorithm | SITE_TFBS_SCAN | Website on-demand TFBS scanning | Website application source SHA256 4fa08ff3adc7b29f8f6c71b018b4d5757ef5ff83031e4067c490cc1ed68bf00a | rubber_app.py: motif probability-matrix scanning of 4000-bp upstream regions or user-submitted sequences | Site-developed algorithm | http://47.95.224.165/rubber/tools | Site-developed; no independent public source-code repository released | No standalone download package released | No explicitly associated publication identified | No independent software publication | Computational design suggestions; no use of Primer3 or CRISPOR, or experimental validation, claimed | |||||
| Software or website algorithm | SITE_SEQUENCE_TOOLS | Website sequence and homologous-arm tools | Website application source SHA256 4fa08ff3adc7b29f8f6c71b018b4d5757ef5ff83031e4067c490cc1ed68bf00a | rubber_sequence.py and website tools: translation, sequence processing and homologous-arm assistance | Site-developed algorithm | http://47.95.224.165/rubber/tools | Site-developed; no independent public source-code repository released | No standalone download package released | No explicitly associated publication identified | No independent software publication | Computational design suggestions; no use of Primer3 or CRISPOR, or experimental validation, claimed | |||||
| Reference database | UniProtKB / Swiss-Prot | UniProtKB / Swiss-Prot | Reviewed Swiss-Prot; exact historical download release not recorded | Homology-based transfer of functional annotations, GO terms and KEGG gene cross-references | https://www.uniprot.org/ | https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/uniprot_sprot.dat.gz | REF033 | UniProt: the Universal Protein Knowledgebase in 2025 | 2025 | 10.1093/nar/gkae1010 | https://doi.org/10.1093/nar/gkae1010 | Database resource publication | Homology-based transfer; original GO evidence codes retained, without implying experiments on the target gene | |||
| Reference database | Pfam (2021 publication) | Pfam (2021 publication) | Pfam-A; exact historical database release not recorded | HMMER domains and candidate transcription-factor families | https://www.ebi.ac.uk/interpro/entry/pfam/ | https://www.ebi.ac.uk/interpro/download/Pfam/ | REF034 | Pfam: The protein families database in 2021 | 2021 | 10.1093/nar/gkaa913 | https://doi.org/10.1093/nar/gkaa913 | Database resource publication | Actual Pfam input cited; no InterProScan execution claimed | |||
| Reference database | STRING v12.0 | STRING v12.0 | 12.0 (actual source manifest) | Homology-based transfer of Arabidopsis associations | https://version-12-0.string-db.org/ | https://stringdb-static.org/download/protein.links.v12.0/3702.protein.links.v12.0.txt.gz | REF035 | The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest | 2023 | 10.1093/nar/gkac1000 | https://doi.org/10.1093/nar/gkac1000 | Database resource publication | Cross-species functional associations; not physical interactions demonstrated in Taraxacum kok-saghyz | |||
| Reference database | JASPAR 2024 (conditional on actual release) | JASPAR 2024 (conditional on actual release) | JASPAR2024 CORE plants non-redundant (retained source record) | Plant motifs and candidate transcription-factor binding sites | https://jaspar.elixir.no/ | https://jaspar.genereg.net/downloads/ | REF036 | JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles | 2024 | 10.1093/nar/gkad1059 | https://doi.org/10.1093/nar/gkad1059 | Database resource publication | Candidate sites; no direct binding demonstrated | |||
| Reference database | PlantTFDB | PlantTFDB | 5.0 (download endpoint in retained motif-transfer scripts) | Experimental donor motifs transferred to TK1151 through homology/reciprocal best hits | https://planttfdb.gao-lab.org/ | https://planttfdb.gao-lab.org/download/motif/PlantTFDB_TF_binding_motifs_from_experiments.gz | REF037 | PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants | 2017 | 10.1093/nar/gkw982 | https://doi.org/10.1093/nar/gkw982 | Database resource publication | Experimental motifs from donor species are not experimental evidence for the target transcription factor | |||
| Reference database | 3did | 3did | 3did_flat.gz; historical release date not recorded | Pfam-domain contact compatibility support | https://3did.irbbarcelona.org/ | https://3did.irbbarcelona.org/ | REF038 | 3did: a catalog of domain-based interactions of known three-dimensional structure | 2014 | 10.1093/nar/gkt887 | https://doi.org/10.1093/nar/gkt887 | Database resource publication | Domain-contact support; no website AlphaFold or molecular-docking result claimed | |||
| Reference database | Gene Ontology (original) | Gene Ontology (original) | GO identifiers, namespaces and taxon constraints retained; historical ontology revision not recorded | GO terms and taxonomic-incompatibility screening | https://geneontology.org/docs/go-citation-policy/ | https://geneontology.org/docs/download-ontology/ | REF039 | Gene Ontology: tool for the unification of biology | 2000 | 10.1038/75556 | https://doi.org/10.1038/75556 | Database resource publication | Annotation summaries provided; enrichment significance testing is not provided | |||
| Reference database | KEGG | KEGG | Swiss-Prot DAT KEGG gene cross-references; no native KO annotation generated | KEGG gene cross-references and candidate-pathway support | https://www.kegg.jp/ | https://www.kegg.jp/kegg/rest/keggapi.html | REF040 | KEGG: biological systems database as a model of the real world | 2025 | 10.1093/nar/gkae909 | https://doi.org/10.1093/nar/gkae909 | Database resource publication | Gene cross-references are not complete KO annotations or pathway enrichment; the actual upstream source is UniProt DAT |
S4 Website Data Provenance
Download table TSV | Back to contents
| Category | Record ID | Filename | Description | Upstream sources | Method or definition | Public page URL | File bytes | Evidence layer | Verification date | Limitations | Historical initial checksum | Retained input SHA256 | Published output SHA256 | Checksum algorithm | Hash record date | Source URL | Checksum scope | Status | Data type | Metadata source | Expression value rows | Related tables |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Derived dataset | DER01 | CRA009020_gene_variants.sqlite3 | Website variant calls for CRA009020 aligned to two references | PUB_WGR_CRA009020;REF_TK1151;REF_OH1004 | minimap2 short-read alignment, SAMtools and bcftools; 129 samples aligned to two references | http://47.95.224.165/rubber/variants | 169207660544 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER02 | coexpression.sqlite3 | Independent historical OH-1004 exploratory coexpression; uniform-TKU network not rebuilt | PRJNA745038;S1 Data Resources;REF_OH1004 | Exploratory Pearson correlations in separate historical count/TPM datasets; not a new network for the 109 uniform samples | http://47.95.224.165/rubber/coexpression | 312512512 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER03 | expression.sqlite3 | Uniform-v4 expression for 109 samples and independent historical OH expression | S1 Data Resources;REF_TK1151;REF_OH1004 | Fixed-model StringTie -e quantification for 109 samples; independent OH sources retained; mapping only where reference relations are unique | http://47.95.224.165/rubber/expression | 5670748160 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER04 | RubberDandelionOmics.core.sqlite3 | Genes, sequences and core annotations | REF_OH1004;REF_TK1151 | Reference FASTA/GFF import | http://47.95.224.165/rubber/gene | 14540800 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER05 | RubberDandelionOmics.old_id_bridge.sqlite3 | Historical gene-ID bridging | REF_TKS_2017;REF_TK1151;REF_OH1004 | BLAST+/DIAMOND sequence mapping with ambiguities retained | http://47.95.224.165/rubber/idmap | 102096896 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER06 | RubberDandelionOmics.proteome.sqlite3 | Proteomic quantification and ID mapping | PUB_PROTEOME_PXD011773;REF_TKS_2017;REF_OH1004 | Import of author-processed MaxQuant outputs; cross-version relations recorded separately | http://47.95.224.165/rubber/proteome | 17580032 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER07 | RubberDandelion_expression_supplement_PMID30514210.sqlite3 | HR/LR/Y11 expression and differential-expression supplements | PUB_TRANSCRIPTOME_S7;PUB_TRANSCRIPTOME_S8 | Import of author-supplied supplementary workbooks in the original contig namespace | http://47.95.224.165/rubber/expression-supplement | 30920704 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER08 | RubberDandelion_function.sqlite3 | Homology-based function, GO and KEGG gene cross-references | REF_TK1151;REF_OH1004;UniProtKB / Swiss-Prot;Gene Ontology (original);KEGG | DIAMOND/BLAST homology transfer and GO taxon screening | http://47.95.224.165/rubber/annotation | 160833536 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER09 | RubberDandelion_homology_domain.sqlite3 | Protein homology and domains | REF_TK1151;REF_OH1004;UniProtKB / Swiss-Prot;Pfam (2021 publication) | DIAMOND+HMMER | http://47.95.224.165/rubber/domains | 213307392 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER10 | RubberDandelion_jbrowse.sqlite3 | Source reference models and browser tracks | REF_TK1151;REF_OH1004 | Source GFF model normalization and JBrowse 2 | http://47.95.224.165/rubber/jbrowse | 974807040 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER11 | RubberDandelion_pathway_candidate.sqlite3 | Candidate metabolic genes | REF_TK1151;REF_OH1004;UniProtKB / Swiss-Prot;KEGG | Homology, functional keywords and domain rules | http://47.95.224.165/rubber/rubber-biosynthesis | 11866112 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER12 | RubberDandelion_candidate_network.sqlite3 | Multiple layers of candidate protein associations | STRING v12.0;PRJNA745038;Pfam (2021 publication);3did;LocPro;REF_TK1151;REF_OH1004 | Separate layers for STRING transfer, historical coexpression, candidate pathways, 3did and localization compatibility | http://47.95.224.165/rubber/ppi | 724500480 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER13 | RubberDandelion_ppi_string_transfer.sqlite3 | Homology-transferred STRING Arabidopsis associations | STRING v12.0;UniProtKB / Swiss-Prot;REF_OH1004 | Homology-based association transfer | http://47.95.224.165/rubber/ppi | 137125888 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER14 | RubberDandelion_reference_comparison.sqlite3 | Reference comparison, ID relations and synteny | REF_TK1151;REF_OH1004 | DIAMOND reciprocal best hits and JCVI blocks; one-to-many relations and ambiguities retained | http://47.95.224.165/rubber/reference | 283213824 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER15 | RubberDandelion_CRA009020_resequencing.sqlite3 | Resequencing metadata for 129 samples | PUB_WGR_CRA009020 | Import of official GSA sample, run and download metadata | http://47.95.224.165/rubber/variants | 102400 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER16 | RubberDandelion_rubber_biosynthesis.sqlite3 | Candidate rubber-biosynthesis pathways | REF_TKS_2017;REF_TK1151;REF_OH1004;UniProtKB / Swiss-Prot | Literature-based pathway rules and homologous candidates; not experimental confirmation of all genes | http://47.95.224.165/rubber/rubber-biosynthesis | 81920 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER17 | RubberDandelion_cross_species_reference.sqlite3 | Cross-species literature evidence for rubber biosynthesis | S1 Data Resources | Manual curation of evidence in the original species; not experimental mechanism validation in Taraxacum kok-saghyz | http://47.95.224.165/rubber/rubber-biosynthesis | 86016 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER18 | RubberDandelion_TK1151_subcellular.sqlite3 | Subcellular localization of representative TK1151 proteins | REF_TK1151;LocPro;ESM2;PROFEAT (sequence features; LocPro reference) | Direct LocPro prediction for 45,224 representative proteins | http://47.95.224.165/rubber/subcellular | 210501632 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER19 | RubberDandelion_subcellular.sqlite3 | Subcellular localization of representative OH-1004 proteins | REF_OH1004;LocPro;ESM2;PROFEAT (sequence features; LocPro reference) | Direct LocPro prediction for 39,103 longest gene-protein representatives | http://47.95.224.165/rubber/subcellular | 425144320 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER20 | RubberDandelion_TK1151_tfbs.sqlite3 | Transcription-factor families, binding sites and candidate targets | REF_TK1151;Pfam (2021 publication);JASPAR 2024 (conditional on actual release);PlantTFDB | HMMER, homology/reciprocal best hits and cached FIMO scans; on-demand scanning uses a site-developed algorithm | http://47.95.224.165/rubber/tfbs | 1604378624 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER21 | tissue_expression_v02.sqlite3 | Expression in eight Zhaosu tissues and 24 samples | OWN_TKS_TISSUE_FPKM_202609;REF_TK1151 | Import of the user-provided FPKM matrix with ID checks | http://47.95.224.165/rubber/tissue-expression | 66691072 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | DER22 | CRA009020_gene_variants.sqlite3 | Website variant calls for CRA009020 aligned to two references | PUB_WGR_CRA009020;REF_TK1151;REF_OH1004 | minimap2 short-read alignment, SAMtools and bcftools; 129 samples aligned to two references | http://47.95.224.165/rubber/variants | 169207660544 | Website-derived data; upstream inputs documented in the source tables | 2026-10-03 | Same-named variant databases recorded separately by configured and resolved paths; computational results distinguished from source-species experiments | ||||||||||||
| Derived dataset | UNIFORM_COVERAGE | TK1151_uniform_coverage_matrix.tsv | 98,473 fixed TKU-model genes x 109 samples: coverage | S1 Data Resources;S2 Samples and Reads;REF_TK1151 | HISAT2 alignment and StringTie 3.0.3 -e -G using the same uniform model, followed by gene-level aggregation | http://47.95.224.165/rubber/tk1151-assembly | 57793009 | Uniform-model re-quantification; historical TK values are not mixed in | 2026-10-03 | 109 samples; coverage is not integer read counts; no new count or CPM matrix generated | ||||||||||||
| Derived dataset | UNIFORM_FPKM | TK1151_uniform_fpkm_matrix.tsv | 98,473 fixed TKU-model genes x 109 samples: fpkm | S1 Data Resources;S2 Samples and Reads;REF_TK1151 | HISAT2 alignment and StringTie 3.0.3 -e -G using the same uniform model, followed by gene-level aggregation | http://47.95.224.165/rubber/tk1151-assembly | 56647397 | Uniform-model re-quantification; historical TK values are not mixed in | 2026-10-03 | 109 samples; coverage is not integer read counts; no new count or CPM matrix generated | ||||||||||||
| Derived dataset | UNIFORM_TPM | TK1151_uniform_tpm_matrix.tsv | 98,473 fixed TKU-model genes x 109 samples: tpm | S1 Data Resources;S2 Samples and Reads;REF_TK1151 | HISAT2 alignment and StringTie 3.0.3 -e -G using the same uniform model, followed by gene-level aggregation | http://47.95.224.165/rubber/tk1151-assembly | 57103503 | Uniform-model re-quantification; historical TK values are not mixed in | 2026-10-03 | 109 samples; coverage is not integer read counts; no new count or CPM matrix generated | ||||||||||||
| File integrity | string_transfer | RubberDandelion_ppi_string_transfer.sqlite3 | 137125888 | Existing cross-species candidate associations; not native PPI | Not recorded; cannot be reconstructed retrospectively | 1314e6cc35c8f59e58da053c119ea3d56a20f69df87355b03ad3e28e6caf07a6 | d58b70879b10f801769804797986b982ee2e22cad9d07fc0aa7be97e563ed87d | SHA256 (published prefixes retained) | Computed on 2026-10-03T16:47:40.943182+08:00 | https://stringdb-downloads.org/download/species.v12.0.txt | Current retained inputs and published outputs are recorded separately; a current hash does not establish the identity of an initial historical file | |||||||||||
| File integrity | coexpression_prjna745038 | RubberDandelion_coexpression_prjna745038.sqlite3 | 419074048 | Historical coexpression input isolated and archived; no newly built uniform-TKU coexpression network claimed | Not recorded; cannot be reconstructed retrospectively | d445978bfc58f09fab2569ab06e788a3d9efe855f0302d5355533a201088a811 | 8f2e6d5751762f0358cec32ef71de594aab8206e9889a711513fd0a7baf111eb | SHA256 (published prefixes retained) | Computed on 2026-10-03T16:55:52.632611+08:00 | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA745038 | Current retained inputs and published outputs are recorded separately; a current hash does not establish the identity of an initial historical file | |||||||||||
| File integrity | pathway_candidates | RubberDandelion_pathway_candidate.sqlite3 | 11866112 | Candidate pathway co-membership | Not recorded; cannot be reconstructed retrospectively | d15fdc652c519e7f274dde9c2c58e48e466f665e97b1d98740b036dbbc65299e | b431f6a8c15e312d7deca061e9422b06e37f06c821fc13ad18cb4cf790dfb933 | SHA256 (published prefixes retained) | Computed on 2026-10-03T16:47:41.176575+08:00 | https://www.uniprot.org/ | Current retained inputs and published outputs are recorded separately; a current hash does not establish the identity of an initial historical file | |||||||||||
| File integrity | rubber_biosynthesis | RubberDandelion_rubber_biosynthesis.sqlite3 | 81920 | 132 rubber/isoprenoid candidate rows | Not recorded; cannot be reconstructed retrospectively | dc32cb618a08a2503d92ac0657cce1f984abb85de51f564c521f81d8b1ab20b8 | 8532ec4c28614ddd4bf86c6f8fda89842a5b618b3f8525999161dac45ab52a73 | SHA256 (published prefixes retained) | Computed on 2026-10-03T16:47:41.177701+08:00 | https://doi.org/10.1093/nsr/nwx101 | Current retained inputs and published outputs are recorded separately; a current hash does not establish the identity of an initial historical file | |||||||||||
| File integrity | pfam_3did | 3did_flat.gz | Domain compatibility candidate source | 092d404d77a36971053404bf3c45e5c8aeb7ea6ca0b9d54c26a3d24bfb96d433 | 092d404d77a36971053404bf3c45e5c8aeb7ea6ca0b9d54c26a3d24bfb96d433 | SHA256 (published prefixes retained) | Not recorded | https://3did.irbbarcelona.org/download/current/3did_flat.gz | Current retained inputs and published outputs are recorded separately; a current hash does not establish the identity of an initial historical file | |||||||||||||
| File integrity | locpro | RubberDandelion_subcellular.sqlite3 | 425144320 | Localization compatibility only | Not recorded; cannot be reconstructed retrospectively | ee03c0268015b54f41708b10268a42f48fb5ba6b27eccbf04c71d8d8b7ce975d | a48eae70c7b7162b4492e66627550687bd4adc7b1531b61baf1fb0023c5f8eff | SHA256 (published prefixes retained) | Computed on 2026-10-03T16:47:43.715953+08:00 | https://github.com/idrblab/LocPro | Current retained inputs and published outputs are recorded separately; a current hash does not establish the identity of an initial historical file | |||||||||||
| File integrity | current_RubberDandelion_TK1151_subcellular | RubberDandelion_TK1151_subcellular.sqlite3 | 210501632 | Current retained-file hash; not an original download checksum | Not recorded | 165c70ccf89faca723adfdbcd5611922a748944a9d0bcada4f18b70cf894bde5 | SHA256 | Computed on 2026-10-03T16:47:44.676377+08:00 | https://github.com/idrblab/LocPro | Full-file SHA256 of the retained file on 2026-10-03 | ||||||||||||
| File integrity | current_1_RubberDandelion_coexpression_prjna745038 | 1_RubberDandelion_coexpression_prjna745038.sqlite3 | 419074048 | Current retained-file hash; not an original download checksum | Not recorded | d445978bfc58f09fab2569ab06e788a3d9efe855f0302d5355533a201088a811 | SHA256 | Computed on 2026-10-03T16:55:52.632611+08:00 | https://3did.irbbarcelona.org/ | Full-file SHA256 of the retained file on 2026-10-03 | ||||||||||||
| File integrity | UNIFORM_COVERAGE | TK1151_uniform_coverage_matrix.tsv | 57793009 | Fixed-model SHA256 b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245 | Not applicable: newly generated derived matrix | d6f21ad1ac0322dafa3e027b2482defa6990d4a634a2df3495ee3a45f6e51eca | SHA256 | Uniform-v4 release manifest, 2026-10-03 | http://47.95.224.165/rubber/tk1151-assembly | Complete derived file; upstream raw-read MD5 checksums are listed in S2 Samples and Reads | ||||||||||||
| File integrity | UNIFORM_FPKM | TK1151_uniform_fpkm_matrix.tsv | 56647397 | Fixed-model SHA256 b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245 | Not applicable: newly generated derived matrix | adbf1e60097207700fac9f09c644d26456db10f8472a031a5df2a9e255c3c90f | SHA256 | Uniform-v4 release manifest, 2026-10-03 | http://47.95.224.165/rubber/tk1151-assembly | Complete derived file; upstream raw-read MD5 checksums are listed in S2 Samples and Reads | ||||||||||||
| File integrity | UNIFORM_TPM | TK1151_uniform_tpm_matrix.tsv | 57103503 | Fixed-model SHA256 b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245 | Not applicable: newly generated derived matrix | 499a3298df26fc29a72a53cecf5cb51427b03bdb530da56be3768ba0aa3b3dd1 | SHA256 | Uniform-v4 release manifest, 2026-10-03 | http://47.95.224.165/rubber/tk1151-assembly | Complete derived file; upstream raw-read MD5 checksums are listed in S2 Samples and Reads | ||||||||||||
| File integrity | GCA_047496595.1 | RubberDandelion_OSU_TarKok_2.0_genome.fna.gz | 357335789 | Website-converted/exported sequences distinguished from original database downloads | Full upstream checksum not supplied; md5_first_1mb is not a full-file MD5 | 24e1c8f3c7ea21f88fc6d804291777e1ec4e404627de95c2b994fba71ce7e969 | SHA256 (where supplied in the source manifest) | Published download manifest; retained copy checked on 2026-10-03 | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | Actual published sequence-download manifest | ||||||||||||
| File integrity | GCA_047496595.1 | RubberDandelion_OSU_TarKok_2.0_genome.gff.gz | 7820060 | Website-converted/exported sequences distinguished from original database downloads | Full upstream checksum not supplied; md5_first_1mb is not a full-file MD5 | 9201e9ef4918ea8ce4aded1eed8f9a6b6548ce9523727c66ca9475262448ea86 | SHA256 (where supplied in the source manifest) | Published download manifest; retained copy checked on 2026-10-03 | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | Actual published sequence-download manifest | ||||||||||||
| File integrity | GCA_047496595.1 | RubberDandelion_OSU_TarKok_2.0_cds.fna.gz | 16072519 | Website-converted/exported sequences distinguished from original database downloads | Full upstream checksum not supplied; md5_first_1mb is not a full-file MD5 | 8365c440d384c0f54c811bbb72703205b8efc47a41cd34e23cf764aa6b3ba820 | SHA256 (where supplied in the source manifest) | Published download manifest; retained copy checked on 2026-10-03 | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | Actual published sequence-download manifest | ||||||||||||
| File integrity | GCA_047496595.1 | RubberDandelion_OSU_TarKok_2.0_protein.faa.gz | 8875630 | Website-converted/exported sequences distinguished from original database downloads | Full upstream checksum not supplied; md5_first_1mb is not a full-file MD5 | 36e25dc8b0692de06ab0bad353f6541a84d75bc9b2175949c90fa950322daadf | SHA256 (where supplied in the source manifest) | Published download manifest; retained copy checked on 2026-10-03 | https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_047496595.1/ | Actual published sequence-download manifest | ||||||||||||
| File integrity | GWHAAAA00000000 | RubberDandelion_GWHAAAA00000000_CDS.fasta.gz | 18335596 | Website-converted/exported sequences distinguished from original database downloads | Full upstream checksum not supplied; md5_first_1mb is not a full-file MD5 | 5e809f96f270e1f6aa75bb17a981fff6e7957a902653d97c2f506243e72e1570 | SHA256 (where supplied in the source manifest) | Published download manifest; retained copy checked on 2026-10-03 | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.CDS.fasta.gz | Actual published sequence-download manifest | ||||||||||||
| File integrity | GWHAAAA00000000 | RubberDandelion_GWHAAAA00000000_protein.faa.gz | 12995401 | Website-converted/exported sequences distinguished from original database downloads | Full upstream checksum not supplied; md5_first_1mb is not a full-file MD5 | 689f29e17896dabe4847c5536a7bca5ece4ae0a9268c4856fbfb11d64febd0ee | SHA256 (where supplied in the source manifest) | Published download manifest; retained copy checked on 2026-10-03 | https://download.cncb.ac.cn/gwh/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/GWHAAAA00000000.Protein.faa.gz | Actual published sequence-download manifest | ||||||||||||
| Website module | home | Home/Search | REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/ | Search formal IDs, version IDs, or keywords from one entry point. | 2026-10-03 | ready | |||||||||||||||
| Website module | gene | Gene Card | REF_TK1151;REF_OH1004;S3 Software and Databases | http://47.95.224.165/rubber/gene/TkokChr01G006191 | Query gene identity, sequences, and annotations by gene ID or keyword. | 2026-10-03 | ready | |||||||||||||||
| Website module | blast | BLAST | REF_TK1151;REF_OH1004;BLAST+ | http://47.95.224.165/rubber/blast | Supports 15 bp primer-level, CDS, protein, and gDNA BLAST against OH-1004 or TK1151. | 2026-10-03 | ready | |||||||||||||||
| Website module | jbrowse | JBrowse Genome Browser | REF_TK1151;REF_OH1004;JBrowse 2 | http://47.95.224.165/rubber/jbrowse | Browse genome structure, gene models, and the current gene context visually. | 2026-10-03 | ready | |||||||||||||||
| Website module | tissue_expression | Tissue Expression | OWN_TKS_TISSUE_FPKM_202609 | http://47.95.224.165/rubber/tissue-expression | Explore FPKM profiles from the in-house bred Zhaosu line across 8 tissues and 24 samples. | 2026-10-03 | ready | |||||||||||||||
| Website module | expression | Expression Atlas | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | http://47.95.224.165/rubber/expression?q=TkokChr01G006191 | Inspect gene expression patterns in public transcriptome datasets such as laticifer response. | 2026-10-03 | ready | |||||||||||||||
| Website module | annotation | Gene Annotation | S3 Software and Databases | http://47.95.224.165/rubber/annotation?q=TkokChr01G006191 | Query multidimensional annotations including Swiss-Prot, GO, KEGG, and functional descriptions. | 2026-10-03 | ready | |||||||||||||||
| Website module | gokegg | GO/KEGG Annotation | UniProtKB / Swiss-Prot;Gene Ontology (original);KEGG | http://47.95.224.165/rubber/enrichment?genes=TkokChr01G006191 | Summarize taxon-screened GO annotations and KEGG gene cross-references; enrichment significance testing is not yet available. | 2026-10-03 | ready | |||||||||||||||
| Website module | synteny | Orthology / Synteny Evidence | REF_TK1151;REF_OH1004;JCVI;DIAMOND | http://47.95.224.165/rubber/synteny?q=TkokChr01G006191 | Inspect cross-reference orthology and synteny-block evidence. | 2026-10-03 | ready | |||||||||||||||
| Website module | tf_prediction | TF Prediction Compatibility Route | Pfam (2021 publication);HMMER;PlantTFDB;JASPAR 2024 (conditional on actual release) | http://47.95.224.165/rubber/tfbs?mode=gene&gene_id=TkokChr03G005784 | Compatibility route retained; the canonical function is provided by the TFBS page. | 2026-10-03 | hidden | |||||||||||||||
| Website module | tfbs | TF Binding Site Prediction | S3 Software and Databases;FIMO;SITE_TFBS_SCAN | http://47.95.224.165/rubber/tfbs?mode=gene&gene_id=TkokChr03G005784 | Predict motif-supported candidate binding sites from 4000 bp upstream regions or submitted DNA sequences. | 2026-10-03 | ready | |||||||||||||||
| Website module | tf_targets | TF Targets | PlantTFDB;JASPAR 2024 (conditional on actual release);FIMO | http://47.95.224.165/rubber/tf-targets?q=TkokChr03G005784 | Query candidate target genes and regulatory-network clues from a TF or family. | 2026-10-03 | ready | |||||||||||||||
| Website module | domains | Protein Domain / Pfam | Pfam (2021 publication);HMMER | http://47.95.224.165/rubber/domains?q=TkokChr01G006191 | View protein domains, hit intervals, and confidence evidence. | 2026-10-03 | ready | |||||||||||||||
| Website module | subcellular | Subcellular Localization | LocPro;ESM2;PROFEAT (sequence features; LocPro reference);REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/subcellular?q=TkokChr01G006191 | Query species-native protein localization predictions and supplementary homology evidence. | 2026-10-03 | ready | |||||||||||||||
| Website module | ppi | PPI / Protein Association | S4 Website Data Provenance;S4 Website Data Provenance | http://47.95.224.165/rubber/ppi?q=TkokChr05G001210 | Query candidate protein-association networks to prioritize functional partners. | 2026-10-03 | ready | |||||||||||||||
| Website module | rubber_biosynthesis | Rubber / Terpenoid / Isoprenoid Metabolism | REF_TKS_2017;S1 Data Resources;UniProtKB / Swiss-Prot;KEGG | http://47.95.224.165/rubber/rubber-biosynthesis?q=LXL04_000258 | Explore rubber-biosynthesis pathways and candidate genes. | 2026-10-03 | ready | |||||||||||||||
| Website module | proteome | Proteome Evidence | PUB_PROTEOME_PXD011773;MaxQuant (upstream source analysis) | http://47.95.224.165/rubber/proteome?q=LXL04_000258 | Choose the dataset first, then inspect gene-level protein abundance, sample intensities, and version bridges. | 2026-10-03 | ready | |||||||||||||||
| Website module | expression_supplement | Root/Latex Expression Supplement | PUB_TRANSCRIPTOME_S7;PUB_TRANSCRIPTOME_S8 | http://47.95.224.165/rubber/expression-supplement?q=contig00001 | Inspect root and latex supplemental expression matrices, labeled separately from formal gene expression. | 2026-10-03 | ready | |||||||||||||||
| Website module | idmap | ID Crosswalk | REF_TKS_2017;REF_TK1151;REF_OH1004;DIAMOND;BLAST+ | http://47.95.224.165/rubber/idmap | Inspect gene-level matches and mapping categories across references. | 2026-10-03 | ready | |||||||||||||||
| Website module | tools | Tools Hub | S3 Software and Databases;REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/tools | Utility collection for sequence translation, interval lookup, and related tools. | 2026-10-03 | ready | |||||||||||||||
| Website module | downloads | Downloads / Citation | S1 Data Resources;S4 Website Data Provenance;S4 Website Data Provenance | http://47.95.224.165/rubber/downloads | Access public downloads, source notes, and citation information. | 2026-10-03 | ready | |||||||||||||||
| Website module | datasets | Data Sources | S1 Data Resources;S1 Data Resources;S1 Data Resources | http://47.95.224.165/rubber/datasets | Review data sources, processing state, and evidence boundaries. | 2026-10-03 | ready | |||||||||||||||
| Website module | about | About | S3 Software and Databases;S5 References | http://47.95.224.165/rubber/about | Read platform notes, data provenance, and citation wording. | 2026-10-03 | ready | |||||||||||||||
| Website module | help | Help | S4 Website Data Provenance | http://47.95.224.165/rubber/help | See example inputs, query workflows, and interpretation boundaries. | 2026-10-03 | ready | |||||||||||||||
| Website module | api | API Docs | S4 Website Data Provenance | http://47.95.224.165/rubber/api-docs | Developer interface notes and batch-query routes. | 2026-10-03 | ready | |||||||||||||||
| Website module | id_converter | Gene ID Converter | REF_TK1151;REF_OH1004;DIAMOND;JCVI | http://47.95.224.165/rubber/id-converter?q=TkA01G000650 | Submit a version ID to view cross-reference matches and mapping confidence. | 2026-10-03 | ready | |||||||||||||||
| Website module | reference | Reference Comparison | REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/reference-comparison | Review the TK1151 and OH-1004 reference-genome comparison notes. | 2026-10-03 | ready | |||||||||||||||
| Website module | interval | Interval Tool | REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/interval?region=CM104799.1:59000-62000 | Find genes within a genomic interval. | 2026-10-03 | ready | |||||||||||||||
| Website module | translate | Translate | SITE_SEQUENCE_TOOLS | http://47.95.224.165/rubber/translate?seq=ATGGCTTAA | Translate DNA to protein and flag invalid characters. | 2026-10-03 | ready | |||||||||||||||
| Website module | coexpression | Coexpression | PRJNA745038;REF_OH1004;S4 Website Data Provenance | http://47.95.224.165/rubber/coexpression?q=TkokChr01G006191&dataset=PRJNA745038_TK1151_RNAseq_TPM | Query candidate coexpression partners from deployed TK1151/OH-1004 public transcriptome matrices. | 2026-10-03 | ready | |||||||||||||||
| Website module | network | Candidate Protein Association Network | S4 Website Data Provenance;S4 Website Data Provenance | http://47.95.224.165/rubber/network?q=TkokChr05G001210 | Visualize gene-centered candidate protein associations with evidence rows and scoped downloads; these are not validated physical interactions. | 2026-10-03 | ready | |||||||||||||||
| Website module | tk1151_assembly | TK1151-guided Transcriptome Assembly and Quantification | REF_TK1151;S2 Samples and Reads;StringTie;HISAT2 | http://47.95.224.165/rubber/tk1151-assembly | Per-sample processing records and verified merged counts, TPM, FPKM and coverage matrices for 109 public RNA-seq runs. | 2026-10-03 | ready | |||||||||||||||
| Website module | variants | Gene Variants | PUB_WGR_CRA009020;S2 Samples and Reads;minimap2;SAMtools;bcftools | http://47.95.224.165/rubber/variants | Query PASS SNPs/Indels by gene across both CRA009020 references and view carrier samples among 129 samples; results are computational candidates. | 2026-10-03 | ready | |||||||||||||||
| Website module | qpcr | qRT-PCR Primer Design | SITE_QPCR;REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/qpcr?query=TkokChr01G000001 | Design qRT-PCR primers from Gene ID, cDNA, or CDS and flag homologous-CDS 3-prime seed risk. | 2026-10-03 | ready | |||||||||||||||
| Website module | hr_primer | Homologous Recombination Primer Design | SITE_SEQUENCE_TOOLS;REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/hr-primer | Detect common restriction sites in-browser and generate homology-arm PCR primers from vector and insert sequences. | 2026-10-03 | ready | |||||||||||||||
| Website module | crispr | CRISPR Editing Target Design | SITE_CRISPR;REF_TK1151;REF_OH1004 | http://47.95.224.165/rubber/crispr?query=TkokChr01G000001 | Rapidly rank SpCas9 NGG targets from Gene ID, CDS, cDNA, or DNA sequence using disclosed sequence rules; no vector-specific primers are generated. | 2026-10-03 | ready | |||||||||||||||
| Expression dataset registration | DRA_unassigned_DRR | DRA_unassigned_DRR; 4 RNA-seq runs; platform=ILLUMINA | PRJDB37370 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB36270 | PRJDB36270; 9 RNA-seq runs; platform=ILLUMINA | PRJDB36270 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1262623 | PRJNA1262623; 15 RNA-seq runs; platform=BGISEQ | PRJNA1262623 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1490093 | PRJNA1490093; 15 RNA-seq runs; platform=ILLUMINA | PRJNA1490093 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA361575 | PRJNA361575; 6 RNA-seq runs; platform=ILLUMINA | PRJNA361575 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA413689 | PRJNA413689; 3 RNA-seq runs; platform=LS454 | PRJNA413689 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA539838 | PRJNA539838; 16 RNA-seq runs; platform=BGISEQ | PRJNA539838 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA681093 | PRJNA681093; 12 RNA-seq runs; platform=ILLUMINA | PRJNA681093 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA745038 | PRJNA745038; 9 RNA-seq runs; platform=ILLUMINA | PRJNA745038 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA827459 | PRJNA827459; 15 RNA-seq runs; platform=ILLUMINA | PRJNA827459 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA918839 | PRJNA918839; 6 RNA-seq runs; platform=ILLUMINA | PRJNA918839 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA931633 | PRJNA931633; 9 RNA-seq runs; platform=ILLUMINA | PRJNA931633 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA985648 | PRJNA985648; 2 RNA-seq runs; platform=ILLUMINA | PRJNA985648 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Metadata catalogue only; no expression values | public RNA-seq metadata | Public NCBI SRA RunInfo metadata | 0 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA745038_MeJA_laticifer_RNAseq | PRJNA745038 MeJA-treated Taraxacum kok-saghyz laticifer RNA-seq; OH-1004 gene-level raw featureCounts counts from public SRA/ENA reads. | PRJNA745038 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | latex/laticifer response | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 360513 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA413689_OH1004_RNAseq_TPM | PRJNA413689 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA413689 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 120171 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA539838_OH1004_RNAseq_TPM | PRJNA539838 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA539838 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 640912 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA827459_OH1004_RNAseq_TPM | PRJNA827459 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA827459 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 600855 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA918839_OH1004_RNAseq_TPM | PRJNA918839 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA918839 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 240342 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA931633_OH1004_RNAseq_TPM | PRJNA931633 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA931633 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 360513 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA985648_OH1004_RNAseq_TPM | PRJNA985648 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA985648 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 80114 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1262623_OH1004_RNAseq_TPM | PRJNA1262623 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA1262623 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 600855 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB36270_OH1004_RNAseq_TPM | PRJDB36270 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJDB36270 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 360513 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | DRA_unassigned_DRR_OH1004_RNAseq_TPM | DRA_unassigned_DRR public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJDB37370 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 160228 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1490093_OH1004_RNAseq_TPM | PRJNA1490093 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA1490093 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 600855 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA745038_OH1004_RNAseq_TPM | PRJNA745038 public RNA-seq realigned to the OH-1004 reference and quantified as gene TPM. | PRJNA745038 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Independent historical OH expression data available for querying | Public transcriptome quantification / OH-1004 / TPM | Public NCBI SRA/ENA; re-quantified against the specified reference genome | 360513 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB36270_TK1151_UNIFORM_V4_COVERAGE | PRJDB36270; TK1151 unified fixed model v4; COVERAGE; 9 RNA-seq samples | PRJDB36270 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJDB36270 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB37370_TK1151_UNIFORM_V4_COVERAGE | PRJDB37370; TK1151 unified fixed model v4; COVERAGE; 4 RNA-seq samples | PRJDB37370 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJDB37370 | 393892 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1262623_TK1151_UNIFORM_V4_COVERAGE | PRJNA1262623; TK1151 unified fixed model v4; COVERAGE; 15 RNA-seq samples | PRJNA1262623 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA1262623 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1490093_TK1151_UNIFORM_V4_COVERAGE | PRJNA1490093; TK1151 unified fixed model v4; COVERAGE; 15 RNA-seq samples | PRJNA1490093 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA1490093 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA361575_TK1151_UNIFORM_V4_COVERAGE | PRJNA361575; TK1151 unified fixed model v4; COVERAGE; 6 RNA-seq samples | PRJNA361575 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA361575 | 590838 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA413689_TK1151_UNIFORM_V4_COVERAGE | PRJNA413689; TK1151 unified fixed model v4; COVERAGE; 3 RNA-seq samples | PRJNA413689 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA413689 | 295419 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA539838_TK1151_UNIFORM_V4_COVERAGE | PRJNA539838; TK1151 unified fixed model v4; COVERAGE; 16 RNA-seq samples | PRJNA539838 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA539838 | 1575568 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA745038_TK1151_UNIFORM_V4_COVERAGE | PRJNA745038; TK1151 unified fixed model v4; COVERAGE; 9 RNA-seq samples | PRJNA745038 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA745038 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA827459_TK1151_UNIFORM_V4_COVERAGE | PRJNA827459; TK1151 unified fixed model v4; COVERAGE; 15 RNA-seq samples | PRJNA827459 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA827459 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA918839_TK1151_UNIFORM_V4_COVERAGE | PRJNA918839; TK1151 unified fixed model v4; COVERAGE; 6 RNA-seq samples | PRJNA918839 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA918839 | 590838 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA931633_TK1151_UNIFORM_V4_COVERAGE | PRJNA931633; TK1151 unified fixed model v4; COVERAGE; 9 RNA-seq samples | PRJNA931633 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA931633 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA985648_TK1151_UNIFORM_V4_COVERAGE | PRJNA985648; TK1151 unified fixed model v4; COVERAGE; 2 RNA-seq samples | PRJNA985648 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; COVERAGE; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA985648 | 196946 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB36270_TK1151_UNIFORM_V4_FPKM | PRJDB36270; TK1151 unified fixed model v4; FPKM; 9 RNA-seq samples | PRJDB36270 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJDB36270 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB37370_TK1151_UNIFORM_V4_FPKM | PRJDB37370; TK1151 unified fixed model v4; FPKM; 4 RNA-seq samples | PRJDB37370 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJDB37370 | 393892 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1262623_TK1151_UNIFORM_V4_FPKM | PRJNA1262623; TK1151 unified fixed model v4; FPKM; 15 RNA-seq samples | PRJNA1262623 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA1262623 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1490093_TK1151_UNIFORM_V4_FPKM | PRJNA1490093; TK1151 unified fixed model v4; FPKM; 15 RNA-seq samples | PRJNA1490093 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA1490093 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA361575_TK1151_UNIFORM_V4_FPKM | PRJNA361575; TK1151 unified fixed model v4; FPKM; 6 RNA-seq samples | PRJNA361575 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA361575 | 590838 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA413689_TK1151_UNIFORM_V4_FPKM | PRJNA413689; TK1151 unified fixed model v4; FPKM; 3 RNA-seq samples | PRJNA413689 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA413689 | 295419 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA539838_TK1151_UNIFORM_V4_FPKM | PRJNA539838; TK1151 unified fixed model v4; FPKM; 16 RNA-seq samples | PRJNA539838 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA539838 | 1575568 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA745038_TK1151_UNIFORM_V4_FPKM | PRJNA745038; TK1151 unified fixed model v4; FPKM; 9 RNA-seq samples | PRJNA745038 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA745038 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA827459_TK1151_UNIFORM_V4_FPKM | PRJNA827459; TK1151 unified fixed model v4; FPKM; 15 RNA-seq samples | PRJNA827459 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA827459 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA918839_TK1151_UNIFORM_V4_FPKM | PRJNA918839; TK1151 unified fixed model v4; FPKM; 6 RNA-seq samples | PRJNA918839 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA918839 | 590838 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA931633_TK1151_UNIFORM_V4_FPKM | PRJNA931633; TK1151 unified fixed model v4; FPKM; 9 RNA-seq samples | PRJNA931633 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA931633 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA985648_TK1151_UNIFORM_V4_FPKM | PRJNA985648; TK1151 unified fixed model v4; FPKM; 2 RNA-seq samples | PRJNA985648 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; FPKM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA985648 | 196946 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB36270_TK1151_UNIFORM_V4_TPM | PRJDB36270; TK1151 unified fixed model v4; TPM; 9 RNA-seq samples | PRJDB36270 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJDB36270 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJDB37370_TK1151_UNIFORM_V4_TPM | PRJDB37370; TK1151 unified fixed model v4; TPM; 4 RNA-seq samples | PRJDB37370 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJDB37370 | 393892 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1262623_TK1151_UNIFORM_V4_TPM | PRJNA1262623; TK1151 unified fixed model v4; TPM; 15 RNA-seq samples | PRJNA1262623 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA1262623 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA1490093_TK1151_UNIFORM_V4_TPM | PRJNA1490093; TK1151 unified fixed model v4; TPM; 15 RNA-seq samples | PRJNA1490093 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA1490093 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA361575_TK1151_UNIFORM_V4_TPM | PRJNA361575; TK1151 unified fixed model v4; TPM; 6 RNA-seq samples | PRJNA361575 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA361575 | 590838 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA413689_TK1151_UNIFORM_V4_TPM | PRJNA413689; TK1151 unified fixed model v4; TPM; 3 RNA-seq samples | PRJNA413689 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA413689 | 295419 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA539838_TK1151_UNIFORM_V4_TPM | PRJNA539838; TK1151 unified fixed model v4; TPM; 16 RNA-seq samples | PRJNA539838 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA539838 | 1575568 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA745038_TK1151_UNIFORM_V4_TPM | PRJNA745038; TK1151 unified fixed model v4; TPM; 9 RNA-seq samples | PRJNA745038 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA745038 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA827459_TK1151_UNIFORM_V4_TPM | PRJNA827459; TK1151 unified fixed model v4; TPM; 15 RNA-seq samples | PRJNA827459 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA827459 | 1477095 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA918839_TK1151_UNIFORM_V4_TPM | PRJNA918839; TK1151 unified fixed model v4; TPM; 6 RNA-seq samples | PRJNA918839 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA918839 | 590838 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA931633_TK1151_UNIFORM_V4_TPM | PRJNA931633; TK1151 unified fixed model v4; TPM; 9 RNA-seq samples | PRJNA931633 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA931633 | 886257 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance | |||||||||||||
| Expression dataset registration | PRJNA985648_TK1151_UNIFORM_V4_TPM | PRJNA985648; TK1151 unified fixed model v4; TPM; 2 RNA-seq samples | PRJNA985648 | Fixed TKU-model and independent OH datasets kept separate; metadata entries do not establish quantified samples | Uniform-v4 expression data available for querying | Public transcriptome quantification / TK1151 / TPM | Uniform v4 fixed TKU loci; model b63dabd24e9d3cd96fb574a1adfe0d0f64c385da0eb3d272d012f299694b2245; TPM; accepted 109-run transcript-derived quantification 2026-10-03; NCBI SRA/ENA PRJNA985648 | 196946 | S1 Data Resources;S2 Samples and Reads;S4 Website Data Provenance |
S5 References
Download table TSV | Back to contents
| Reference ID | Paper title | Authors | Journal | Publication year | DOI | Paper URL | Relationship to resource | Verification URL | Verification date |
|---|---|---|---|---|---|---|---|---|---|
| REF001 | Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum | Tao Lin; Xia Xu; Huilong Du; Xiuli Fan; Qingwen Chen; Chunyan Hai; Zijian Zhou; Xiao Su; Liquan Kou; Qiang Gao; Lingwei Deng; Jinsheng Jiang; Hanli You; Yihua Ma; Zhukuan Cheng; Guodong Wang; Chengzhi Liang; Guomin Zhang; Hong Yu; Jiayang Li | Science China Life Sciences | 2022 | 10.1007/s11427-021-2033-2 | https://doi.org/10.1007/s11427-021-2033-2 | Original reference genome publication | https://ngdc.cncb.ac.cn/gwh/api/public/assembly/GWHBCHF00000000; https://api.crossref.org/works/10.1007/s11427-021-2033-2; https://link.springer.com/article/10.1007/s11427-021-2033-2 | 2026-10-03 |
| REF002 | Genome analysis of Taraxacum kok-saghyz Rodin provides new insights into rubber biosynthesis | Tao Lin; Xia Xu; Jue Ruan; Shizhong Liu; Shigang Wu; Xiujuan Shao; Xiaobo Wang; Lin Gan; Bi Qin; Yushuang Yang; Zhukuan Cheng; Suhua Yang; Zhonghua Zhang; Guosheng Xiong; Sanwen Huang; Hong Yu; Jiayang Li | National Science Review | 2018 | 10.1093/nsr/nwx101 | https://doi.org/10.1093/nsr/nwx101 | Original reference genome publication | https://ngdc.cncb.ac.cn/gwh/api/public/assembly/GWHAAAA00000000; https://api.crossref.org/works/10.1093/nsr/nwx101; https://academic.oup.com/nsr/article/5/1/78/4093910 | 2026-10-03 |
| REF003 | Geranyl Diphosphate Synthases GDS 1 and GDS7 Facilitate Natural Rubber Biosynthesis in Taraxacum kok-saghyz Roots | Baoqiang Wang; Boxuan Yuan; Guoen Ao; Xiaoyou Wu; Fengyan Fang; Shiqi Long; Shugang Hui | Plants | 2025 | 10.3390/plants14192980 | https://www.mdpi.com/2223-7747/14/19/2980 | verified_article_reuse_accession_origin_not_established | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1262623; https://api.crossref.org/works/10.3390/plants14192980; https://www.mdpi.com/2223-7747/14/19/2980 | 2026-10-03 |
| REF004 | Analysis of the first Taraxacum kok-saghyz transcriptome reveals potential rubber yield related SNPs | Zinan Luo; Brian J. Iaffaldano; Xiaofeng Zhuang; Jonathan Fresnedo-Ramírez; Katrina Cornish | Scientific Reports | 2017 | 10.1038/s41598-017-09034-2 | https://pmc.ncbi.nlm.nih.gov/articles/PMC5577190/ | verified_article_run_accession_to_bioproject | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA361575; https://pmc.ncbi.nlm.nih.gov/articles/PMC5577190/; https://www.ncbi.nlm.nih.gov/sra/SRR5181661; https://api.crossref.org/works/10.1038/s41598-017-09034-2 | 2026-10-03 |
| REF005 | Comparative transcriptomics between high and low rubber producing Taraxacum kok-saghyz R. plants | Francesco Panara; Loredana Lopez; Loretta Daddiego; Elio Fantini; Paolo Facella; Gaetano Perrotta | BMC Genomics | 2018 | 10.1186/s12864-018-5287-4 | https://pmc.ncbi.nlm.nih.gov/articles/PMC6280347/ | verified_bioproject_publication_and_article_accession; Original data or author-supplied supplementary material publication | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA413689; https://api.crossref.org/works/10.1186/s12864-018-5287-4; https://pmc.ncbi.nlm.nih.gov/articles/PMC6280347/ | 2026-10-03 |
| REF006 | Genome-Wide Identification and Characterization of the HMGR Gene Family in Taraxacum kok-saghyz Provide Insights into Its Regulation in Response to Ethylene and Methyl Jsamonate Treatments | Pingping Du; Huan He; Jiayin Wang; Lili Wang; Zhuang Meng; Xiang Jin; Liyu Zhang; Fei Wang; Hongbin Li; Quanliang Xie | Plants | 2024 | 10.3390/plants13182646 | https://pmc.ncbi.nlm.nih.gov/articles/PMC11435204/ | verified_article_reuse_accession_origin_not_established | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA539838; https://pmc.ncbi.nlm.nih.gov/articles/PMC11435204/; https://www.mdpi.com/2223-7747/13/18/2646; https://api.crossref.org/works/10.1016/j.indcrop.2022.114776 | 2026-10-03 |
| REF007 | The Chrysanthemum lavandulifolium genome and the molecular mechanism underlying diverse capitulum types | Xiaohui Wen; Junzhuo Li; Lili Wang; Chenfei Lu; Qiang Gao; Peng Xu; Ya Pu; Qiuling Zhang; Yan Hong; Luo Hong; He Huang; Huaigen Xin; Xiaoyun Wu; Dongru Kang; Kang Gao; Yajun Li; Chaofeng Ma; Xuming Li; Hongkun Zheng; Zicheng Wang; Yuannian Jiao; Liangsheng Zhang; Silan Dai | Horticulture Research | 2022 | 10.1093/hr/uhab022 | https://academic.oup.com/hr/article/doi/10.1093/hr/uhab022/6510191 | verified_bioproject_publication_and_article_accession | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA681093; https://api.crossref.org/works/10.1093/hr/uhab022; https://academic.oup.com/hr/article/doi/10.1093/hr/uhab022/6510191; https://www.ncbi.nlm.nih.gov/sra/SRR15099898 | 2026-10-03 |
| REF008 | Transcriptome analysis of Taraxacum kok-saghyz reveals the role of exogenous methyl jasmonate in regulating rubber biosynthesis and drought tolerance | Gaoquan Dong; Hainan Wang; Jiyan Qi; Yadong Leng; Jun Huang; Hao Zhang; Jie Yan | Gene | 2023 | 10.1016/j.gene.2023.147346 | https://pubmed.ncbi.nlm.nih.gov/36898514/ | candidate_article_metadata_verified_accession_link_not_verified | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA745038; https://api.crossref.org/works/10.1016/j.gene.2023.147346; https://pubmed.ncbi.nlm.nih.gov/36898514/ | 2026-10-03 |
| REF009 | Metabolic and Transcriptomic Analyses Reveal the Effects of Ethephon on Taraxacum kok-saghyz Rodin | Zhanjiang Zhang; Guang Shen; Yihua Yang; Cui Li; Xiaoying Chen; Xiaonan Yang; Xiaoyun Guo; Jianhua Miao; Li Li; Ming Lei | Molecules | 2022 | 10.3390/molecules27113548 | https://pmc.ncbi.nlm.nih.gov/articles/PMC9182187/ | verified_article_accession | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA827459; https://api.crossref.org/works/10.3390/molecules27113548; https://pmc.ncbi.nlm.nih.gov/articles/PMC9182187/ | 2026-10-03 |
| REF010 | Enhanced natural rubber production in rubber dandelion Taraxacum kok-saghyz roots by foliar application of a natural lipid | Jong-Chan Park; Tengfang Ling; Mi Young Kim; Sung Woo Bae; Stephen Beungtae Ryu | Industrial Crops and Products | 2024 | 10.1016/j.indcrop.2023.117714 | https://www.sciencedirect.com/science/article/pii/S0926669023014796 | candidate_article_metadata_verified_accession_link_not_verified | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA918839; https://api.crossref.org/works/10.1016/j.indcrop.2023.117714; https://www.sciencedirect.com/science/article/pii/S0926669023014796 | 2026-10-03 |
| REF011 | Overexpression of a pseudo-etiolated-in-light-like protein in Taraxacum koksaghyz leads to a pale green phenotype and enables transcriptome-based network analysis of photomorphogenesis and isoprenoid biosynthesis | Silva Melissa Wolters; Vincent Alexander Benninghaus; Kai-Uwe Roelfs; Nicole van Deenen; Richard M. Twyman; Dirk Prüfer; Christian Schulze Gronover | Frontiers in Plant Science | 2023 | 10.3389/fpls.2023.1228961 | https://pmc.ncbi.nlm.nih.gov/articles/PMC10569127/ | verified_article_accession | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA985648; https://api.crossref.org/works/10.3389/fpls.2023.1228961; https://pmc.ncbi.nlm.nih.gov/articles/PMC10569127/ | 2026-10-03 |
| REF012 | Comparative proteome and metabolome analyses of latex-exuding and non-exuding Taraxacum koksaghyz roots provide insights into laticifer biology | Vincent Alexander Benninghaus; Nicole van Deenen; Boje Müller; Kai-Uwe Roelfs; Ines Lassowskat; Iris Finkemeier; Dirk Prüfer; Christian Schulze Gronover | Journal of Experimental Botany | 2020 | 10.1093/jxb/erz512 | https://doi.org/10.1093/jxb/erz512 | Original data or author-supplied supplementary material publication | https://www.ebi.ac.uk/pride/ws/archive/v2/projects/PXD011773; https://proteomecentral.proteomexchange.org/dataset/PXD011773; https://api.crossref.org/works/10.1093/jxb/erz512; https://pmc.ncbi.nlm.nih.gov/articles/PMC7031084/ | 2026-10-03 |
| REF013 | Construction of the first high-density SNP genetic map and identification of QTLs for the natural rubber content in Taraxacum kok-saghyz Rodin | Yushuang Yang; Bi Qin; Qiuhui Chen; Qiuhai Nie; Jichuan Zhang; Liqun Zhang; Shizhong Liu | BMC Genomics | 2023 | 10.1186/s12864-022-09105-3 | https://doi.org/10.1186/s12864-022-09105-3 | Original data or author-supplied supplementary material publication; Original resequencing publication | https://link.springer.com/article/10.1186/s12864-022-09105-3; https://api.crossref.org/works/10.1186/s12864-022-09105-3; https://ngdc.cncb.ac.cn/gsa/browse/CRA009020 | 2026-10-03 |
| REF014 | LocPro: A deep learning-based prediction of protein subcellular localization for promoting multi-directional pharmaceutical research | Yintao Zhang; Lingyan Zheng; Nanxin You; Wei Hu; Wanghao Jiang; Mingkun Lu; Hangwei Xu; Haibin Dai; Tingting Fu; Ying Zhou | Journal of Pharmaceutical Analysis | 2025 | 10.1016/j.jpha.2025.101255 | https://doi.org/10.1016/j.jpha.2025.101255 | Software methods publication | https://jpa.xjtu.edu.cn/article/doi/10.1016/j.jpha.2025.101255?pageType=en; https://api.crossref.org/works/10.1016%2Fj.jpha.2025.101255; https://github.com/idrblab/LocPro | 2026-10-03 |
| REF015 | Evolutionary-scale prediction of atomic-level protein structure with a language model | Zeming Lin; Halil Akin; Roshan Rao; Brian Hie; Zhongkai Zhu; Wenting Lu; Nikita Smetanin; Robert Verkuil; Ori Kabeli; Yaniv Shmueli; Allan dos Santos Costa; Maryam Fazel-Zarandi; Tom Sercu; Salvatore Candido; Alexander Rives | Science | 2023 | 10.1126/science.ade2574 | https://doi.org/10.1126/science.ade2574 | Software methods publication | https://github.com/facebookresearch/esm; https://api.crossref.org/works/10.1126%2Fscience.ade2574 | 2026-10-03 |
| REF016 | Update of PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence | H. B. Rao; F. Zhu; G. B. Yang; Z. R. Li; Y. Z. Chen | Nucleic Acids Research | 2011 | 10.1093/nar/gkr284 | https://doi.org/10.1093/nar/gkr284 | Software methods publication | https://pmc.ncbi.nlm.nih.gov/articles/PMC3125735/; https://api.crossref.org/works/10.1093%2Fnar%2Fgkr284 | 2026-10-03 |
| REF017 | Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype | Daehwan Kim; Joseph M. Paggi; Chanhee Park; Christopher Bennett; Steven L. Salzberg | Nature Biotechnology | 2019 | 10.1038/s41587-019-0201-4 | https://doi.org/10.1038/s41587-019-0201-4 | Software methods publication | https://www.nature.com/articles/s41587-019-0201-4; https://api.crossref.org/works/10.1038%2Fs41587-019-0201-4 | 2026-10-03 |
| REF018 | StringTie enables improved reconstruction of a transcriptome from RNA-seq reads | Mihaela Pertea; Geo M Pertea; Corina M Antonescu; Tsung-Cheng Chang; Joshua T Mendell; Steven L Salzberg | Nature Biotechnology | 2015 | 10.1038/nbt.3122 | https://doi.org/10.1038/nbt.3122 | Software methods publication | https://www.nature.com/articles/nbt.3122; https://api.crossref.org/works/10.1038%2Fnbt.3122 | 2026-10-03 |
| REF019 | Twelve years of SAMtools and BCFtools | Petr Danecek; James K Bonfield; Jennifer Liddle; John Marshall; Valeriu Ohan; Martin O Pollard; Andrew Whitwham; Thomas Keane; Shane A McCarthy; Robert M Davies; Heng Li | GigaScience | 2021 | 10.1093/gigascience/giab008 | https://doi.org/10.1093/gigascience/giab008 | Software methods publication | https://pmc.ncbi.nlm.nih.gov/articles/PMC7931819/; https://api.crossref.org/works/10.1093%2Fgigascience%2Fgiab008 | 2026-10-03 |
| REF020 | BLAST+: architecture and applications | Christiam Camacho; George Coulouris; Vahram Avagyan; Ning Ma; Jason Papadopoulos; Kevin Bealer; Thomas L Madden | BMC Bioinformatics | 2009 | 10.1186/1471-2105-10-421 | https://doi.org/10.1186/1471-2105-10-421 | Software methods publication | https://doi.org/10.1186/1471-2105-10-421; https://api.crossref.org/works/10.1186%2F1471-2105-10-421 | 2026-10-03 |
| REF021 | Accelerated Profile HMM Searches | Sean R. Eddy | PLoS Computational Biology | 2011 | 10.1371/journal.pcbi.1002195 | https://doi.org/10.1371/journal.pcbi.1002195 | Software methods publication | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002195; https://api.crossref.org/works/10.1371%2Fjournal.pcbi.1002195 | 2026-10-03 |
| REF022 | FIMO: scanning for occurrences of a given motif | Charles E. Grant; Timothy L. Bailey; William Stafford Noble | Bioinformatics | 2011 | 10.1093/bioinformatics/btr064 | https://doi.org/10.1093/bioinformatics/btr064 | Software methods publication | https://meme-suite.org/meme/doc/fimo.html?man_type=web; https://api.crossref.org/works/10.1093%2Fbioinformatics%2Fbtr064 | 2026-10-03 |
| REF023 | Sensitive protein alignments at tree-of-life scale using DIAMOND | Benjamin Buchfink; Klaus Reuter; Hajk-Georg Drost | Nature Methods | 2021 | 10.1038/s41592-021-01101-x | https://doi.org/10.1038/s41592-021-01101-x | Software methods publication | https://github.com/bbuchfink/diamond/blob/master/README.md; https://api.crossref.org/works/10.1038%2Fs41592-021-01101-x | 2026-10-03 |
| REF024 | JCVI: A versatile toolkit for comparative genomics analysis | Haibao Tang; Vivek Krishnakumar; Xiaofei Zeng; Zhougeng Xu; Adam Taranto; Johnathan S. Lomas; Yixing Zhang; Yumin Huang; Yibin Wang; Won Cheol Yim; Jisen Zhang; Xingtan Zhang | iMeta | 2024 | 10.1002/imt2.211 | https://doi.org/10.1002/imt2.211 | Software methods publication | https://pmc.ncbi.nlm.nih.gov/articles/PMC11316928/; https://api.crossref.org/works/10.1002%2Fimt2.211 | 2026-10-03 |
| REF025 | Minimap2: pairwise alignment for nucleotide sequences | Heng Li | Bioinformatics | 2018 | 10.1093/bioinformatics/bty191 | https://doi.org/10.1093/bioinformatics/bty191 | Software methods publication | https://github.com/lh3/minimap2; https://github.com/lh3/minimap2/releases; https://api.crossref.org/works/10.1093%2Fbioinformatics%2Fbty191 | 2026-10-03 |
| REF026 | KMC 3: counting and manipulating k-mer statistics | Marek Kokot; Maciej Długosz; Sebastian Deorowicz | Bioinformatics | 2017 | 10.1093/bioinformatics/btx304 | https://doi.org/10.1093/bioinformatics/btx304 | Software methods publication | https://github.com/refresh-bio/KMC; https://github.com/refresh-bio/KMC/releases; https://api.crossref.org/works/10.1093%2Fbioinformatics%2Fbtx304 | 2026-10-03 |
| REF027 | MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification | Jürgen Cox; Matthias Mann | Nature Biotechnology | 2008 | 10.1038/nbt.1511 | https://doi.org/10.1038/nbt.1511 | Software methods publication | https://www.maxquant.org/maxquant/; https://api.crossref.org/works/10.1038%2Fnbt.1511 | 2026-10-03 |
| REF028 | featureCounts: an efficient general purpose program for assigning sequence reads to genomic features | Yang Liao; Gordon K. Smyth; Wei Shi | Bioinformatics | 2014 | 10.1093/bioinformatics/btt656 | https://doi.org/10.1093/bioinformatics/btt656 | Software methods publication | https://subread.sourceforge.net/; https://api.crossref.org/works/10.1093%2Fbioinformatics%2Fbtt656 | 2026-10-03 |
| REF029 | JBrowse 2: a modular genome browser with views of synteny and structural variation | Colin Diesh; Garrett J Stevens; Peter Xie; Teresa De Jesus Martinez; Elliot A. Hershberg; Angel Leung; Emma Guo; Shihab Dider; Junjun Zhang; Caroline Bridge; Gregory Hogue; Andrew Duncan; Matthew Morgan; Tia Flores; Benjamin N. Bimber; Robin Haw; Scott Cain; Robert M. Buels; Lincoln D. Stein; Ian H. Holmes | Genome Biology | 2023 | 10.1186/s13059-023-02914-z | https://doi.org/10.1186/s13059-023-02914-z | Software methods publication | https://jbrowse.org/jb2-staging/docs/faq/; https://api.crossref.org/works/10.1186%2Fs13059-023-02914-z | 2026-10-03 |
| REF030 | Array programming with NumPy | Charles R. Harris; K. Jarrod Millman; Stéfan J. van der Walt; Ralf Gommers; Pauli Virtanen; David Cournapeau; Eric Wieser; Julian Taylor; Sebastian Berg; Nathaniel J. Smith; Robert Kern; Matti Picus; Stephan Hoyer; Marten H. van Kerkwijk; Matthew Brett; Allan Haldane; Jaime Fernández del Río; Mark Wiebe; Pearu Peterson; Pierre Gérard-Marchant; Kevin Sheppard; Tyler Reddy; Warren Weckesser; Hameer Abbasi; Christoph Gohlke; Travis E. Oliphant | Nature | 2020 | 10.1038/s41586-020-2649-2 | https://doi.org/10.1038/s41586-020-2649-2 | Software methods publication | https://api.crossref.org/works/10.1038/s41586-020-2649-2 | 2026-10-03 |
| REF031 | Data Structures for Statistical Computing in Python | Wes McKinney | Proceedings of the Python in Science Conference | 2010 | 10.25080/majora-92bf1922-00a | https://doi.org/10.25080/Majora-92bf1922-00a | Software methods publication | https://api.crossref.org/works/10.25080/Majora-92bf1922-00a | 2026-10-03 |
| REF032 | PyTorch: An Imperative Style, High-Performance Deep Learning Library | Paszke, Adam; Gross, Sam; Massa, Francisco; Lerer, Adam; Bradbury, James; Chanan, Gregory; Killeen, Trevor; Lin, Zeming; Gimelshein, Natalia; Antiga, Luca; Desmaison, Alban; Kopf, Andreas; Yang, Edward; DeVito, Zachary; Raison, Martin; Tejani, Alykhan; Chilamkurthy, Sasank; Steiner, Benoit; Fang, Lu; Bai, Junjie; Chintala, Soumith | Advances in Neural Information Processing Systems 32 | 2019 | https://proceedings.neurips.cc/paper/2019/hash/bdbca288fee7f92f2bfa9f7012727740-Abstract.html | Official technical documentation; no specific methods paper | https://proceedings.neurips.cc/paper/2019/hash/bdbca288fee7f92f2bfa9f7012727740-Abstract.html | 2026-10-03 | |
| REF033 | UniProt: the Universal Protein Knowledgebase in 2025 | The UniProt Consortium; Alex Bateman; Maria-Jesus Martin; Sandra Orchard; Michele Magrane; Aduragbemi Adesina; Shadab Ahmad; Emily H Bowler-Barnett; Hema Bye-A-Jee; David Carpentier; Paul Denny; Jun Fan; Penelope Garmiri; Leonardo Jose da Costa Gonzales; Abdulrahman Hussein; Alexandr Ignatchenko; Giuseppe Insana; Rizwan Ishtiaq; Vishal Joshi; Dushyanth Jyothi; Swaathi Kandasaamy; Antonia Lock; Aurelien Luciani; Jie Luo; Yvonne Lussi; Juan Sebastian Martinez Marin; Pedro Raposo; Daniel L Rice; Rafael Santos; Elena Speretta; James Stephenson; Prabhat Totoo; Nidhi Tyagi; Nadya Urakova; Preethi Vasudev; Kate Warner; Supun Wijerathne; Conny Wing-Heng Yu; Rossana Zaru; Alan J Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H Auchincloss; Kristian B Axelsen; Parit Bansal; Delphine Baratin; Teresa M Batista Neto; Marie-Claude Blatter; Jerven T Bolleman; Emmanuel Boutet; Lionel Breuza; Blanca Cabrera Gil; Cristina Casals-Casas; Kamal Chikh Echioukh; Elisabeth Coudert; Beatrice Cuche; Edouard de Castro; Anne Estreicher; Maria L Famiglietti; Marc Feuermann; Elisabeth Gasteiger; Pascale Gaudet; Sebastien Gehant; Vivienne Gerritsen; Arnaud Gos; Nadine Gruaz; Chantal Hulo; Nevila Hyka-Nouspikel; Florence Jungo; Arnaud Kerhornou; Philippe Le Mercier; Damien Lieberherr; Patrick Masson; Anne Morgat; Salvo Paesano; Ivo Pedruzzi; Sandrine Pilbout; Lucille Pourcel; Sylvain Poux; Monica Pozzato; Manuela Pruess; Nicole Redaschi; Catherine Rivoire; Christian J A Sigrist; Karin Sonesson; Shyamala Sundaram; Anastasia Sveshnikova; Cathy H Wu; Cecilia N Arighi; Chuming Chen; Yongxing Chen; Hongzhan Huang; Kati Laiho; Minna Lehvaslaiho; Peter McGarvey; Darren A Natale; Karen Ross; C R Vinayaka; Yuqi Wang; Jian Zhang | Nucleic Acids Research | 2025 | 10.1093/nar/gkae1010 | https://doi.org/10.1093/nar/gkae1010 | Database resource publication | https://www.uniprot.org/help/publications; https://api.crossref.org/works/10.1093%2Fnar%2Fgkae1010 | 2026-10-03 |
| REF034 | Pfam: The protein families database in 2021 | Jaina Mistry; Sara Chuguransky; Lowri Williams; Matloob Qureshi; Gustavo A Salazar; Erik L L Sonnhammer; Silvio C E Tosatto; Lisanna Paladin; Shriya Raj; Lorna J Richardson; Robert D Finn; Alex Bateman | Nucleic Acids Research | 2021 | 10.1093/nar/gkaa913 | https://doi.org/10.1093/nar/gkaa913 | Database resource publication | https://doi.org/10.1093/nar/gkaa913; https://api.crossref.org/works/10.1093%2Fnar%2Fgkaa913 | 2026-10-03 |
| REF035 | The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest | Damian Szklarczyk; Rebecca Kirsch; Mikaela Koutrouli; Katerina Nastou; Farrokh Mehryary; Radja Hachilif; Annika L Gable; Tao Fang; Nadezhda T Doncheva; Sampo Pyysalo; Peer Bork; Lars J Jensen; Christian von Mering | Nucleic Acids Research | 2023 | 10.1093/nar/gkac1000 | https://doi.org/10.1093/nar/gkac1000 | Database resource publication | https://string-db.org/cgi/about; https://api.crossref.org/works/10.1093%2Fnar%2Fgkac1000 | 2026-10-03 |
| REF036 | JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles | Ieva Rauluseviciute; Rafael Riudavets-Puig; Romain Blanc-Mathieu; Jaime A Castro-Mondragon; Katalin Ferenc; Vipin Kumar; Roza Berhanu Lemma; Jérémy Lucas; Jeanne Chèneby; Damir Baranasic; Aziz Khan; Oriol Fornes; Sveinung Gundersen; Morten Johansen; Eivind Hovig; Boris Lenhard; Albin Sandelin; Wyeth W Wasserman; François Parcy; Anthony Mathelier | Nucleic Acids Research | 2024 | 10.1093/nar/gkad1059 | https://doi.org/10.1093/nar/gkad1059 | Database resource publication | https://jaspar.elixir.no/faq/; https://api.crossref.org/works/10.1093%2Fnar%2Fgkad1059 | 2026-10-03 |
| REF037 | PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants | Jinpu Jin; Feng Tian; De-Chang Yang; Yu-Qi Meng; Lei Kong; Jingchu Luo; Ge Gao | Nucleic Acids Research | 2017 | 10.1093/nar/gkw982 | https://doi.org/10.1093/nar/gkw982 | Database resource publication | https://planttfdb.gao-lab.org/; https://api.crossref.org/works/10.1093%2Fnar%2Fgkw982 | 2026-10-03 |
| REF038 | 3did: a catalog of domain-based interactions of known three-dimensional structure | Roberto Mosca; Arnaud Céol; Amelie Stein; Roger Olivella; Patrick Aloy | Nucleic Acids Research | 2014 | 10.1093/nar/gkt887 | https://doi.org/10.1093/nar/gkt887 | Database resource publication | https://3did.irbbarcelona.org/; https://api.crossref.org/works/10.1093%2Fnar%2Fgkt887 | 2026-10-03 |
| REF039 | Gene Ontology: tool for the unification of biology | Michael Ashburner; Catherine A. Ball; Judith A. Blake; David Botstein; Heather Butler; J. Michael Cherry; Allan P. Davis; Kara Dolinski; Selina S. Dwight; Janan T. Eppig; Midori A. Harris; David P. Hill; Laurie Issel-Tarver; Andrew Kasarskis; Suzanna Lewis; John C. Matese; Joel E. Richardson; Martin Ringwald; Gerald M. Rubin; Gavin Sherlock | Nature Genetics | 2000 | 10.1038/75556 | https://doi.org/10.1038/75556 | Database resource publication | https://geneontology.org/docs/go-citation-policy/; https://geneontology.org/docs/download-ontology/; https://api.crossref.org/works/10.1038%2F75556 | 2026-10-03 |
| REF040 | KEGG: biological systems database as a model of the real world | Minoru Kanehisa; Miho Furumichi; Yoko Sato; Yuriko Matsuura; Mari Ishiguro-Watanabe | Nucleic Acids Research | 2025 | 10.1093/nar/gkae909 | https://doi.org/10.1093/nar/gkae909 | Database resource publication | https://www.kegg.jp/; https://www.kegg.jp/kegg/rest/; https://api.crossref.org/works/10.1093%2Fnar%2Fgkae909; https://pubmed.ncbi.nlm.nih.gov/39417505/ | 2026-10-03 |
| REF041 | Identification and reconstitution of the rubber biosynthetic machinery on rubber particles from Hevea brasiliensis | Satoshi Yamashita; Haruhiko Yamaguchi; Toshiyuki Waki; Yuichi Aoki; Makie Mizuno; Fumihiro Yanbe; Tomoki Ishii; Ayuta Funaki; Yuzuru Tozawa; Yukino Miyagi-Inoue; Kazuhisa Fushihara; Toru Nakayama; Seiji Takahashi | eLife | 2016 | 10.7554/elife.19022 | https://doi.org/10.7554/eLife.19022 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.7554/eLife.19022 | 2026-10-03 |
| REF042 | Molecular cloning, expression and characterization of cDNA encoding cis ‐prenyltransferases from Hevea brasiliensis | Kasem Asawatreratanakul; Yuan‐Wei Zhang; Dhirayos Wititsuwannakul; Rapepun Wititsuwannakul; Seiji Takahashi; Atiya Rattanapittayaporn; Tanetoshi Koyama | European Journal of Biochemistry | 2003 | 10.1046/j.1432-1033.2003.03863.x | https://doi.org/10.1046/j.1432-1033.2003.03863.x | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1046/j.1432-1033.2003.03863.x | 2026-10-03 |
| REF043 | Molecular Studies of the Protein Complexes Involving Cis-Prenyltransferase in Guayule (Parthenium argentatum), an Alternative Rubber-Producing Plant | Adam M. Lakusta; Moonhyuk Kwon; Eun-Joo G. Kwon; Solomon Stonebloom; Henrik V. Scheller; Dae-Kyun Ro | Frontiers in Plant Science | 2019 | 10.3389/fpls.2019.00165 | https://doi.org/10.3389/fpls.2019.00165 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.3389/fpls.2019.00165 | 2026-10-03 |
| REF044 | Reconstitution of prenyltransferase activity on nanodiscs by components of the rubber synthesis machinery of the Para rubber tree and guayule | Fu Kuroiwa; Akira Nishino; Yasuko Mandal; Masataka Honzawa; Miki Suenaga-Hiromori; Kakeru Suzuki; Yukie Takani; Yukino Miyagi-Inoue; Haruhiko Yamaguchi; Satoshi Yamashita; Seiji Takahashi; Yuzuru Tozawa | Scientific Reports | 2022 | 10.1038/s41598-022-07564-y | https://doi.org/10.1038/s41598-022-07564-y | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1038/s41598-022-07564-y | 2026-10-03 |
| REF045 | Downregulation of a CYP74 Rubber Particle Protein Increases Natural Rubber Production in Parthenium argentatum | Dante F. Placido; Niu Dong; Chen Dong; Von Mark V. Cruz; David A. Dierig; Rebecca E. Cahoon; Byung-guk Kang; Trinh Huynh; Maureen Whalen; Grisel Ponciano; Colleen McMahan | Frontiers in Plant Science | 2019 | 10.3389/fpls.2019.00760 | https://doi.org/10.3389/fpls.2019.00760 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.3389/fpls.2019.00760 | 2026-10-03 |
| REF046 | RNASeq analysis of drought-stressed guayule reveals the role of gene transcription for modulating rubber, resin, and carbohydrate synthesis | Chen Dong; Grisel Ponciano; Naxin Huo; Yong Gu; Daniel Ilut; Colleen McMahan | Scientific Reports | 2021 | 10.1038/s41598-021-01026-7 | https://doi.org/10.1038/s41598-021-01026-7 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1038/s41598-021-01026-7 | 2026-10-03 |
| REF047 | Transcriptome analysis of rubber biosynthesis in guayule (Parthenium argentatum gray) | Solomon H. Stonebloom; Henrik Vibe Scheller | BMC Plant Biology | 2019 | 10.1186/s12870-019-1669-2 | https://doi.org/10.1186/s12870-019-1669-2 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1186/s12870-019-1669-2 | 2026-10-03 |
| REF048 | Characterization of Small Rubber Particle Protein 1 promoter from guayule (Parthenium argentatum) | Grisel Ponciano; Niu Dong; Chen Dong; Kumiko Johnson; Tina Williams; Delilah F. Wood; Grace Chen | BMC Research Notes | 2025 | 10.1186/s13104-025-07448-0 | https://doi.org/10.1186/s13104-025-07448-0 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1186/s13104-025-07448-0 | 2026-10-03 |
| REF049 | Laticifer-Specific cis-Prenyltransferase Silencing Affects the Rubber, Triterpene, and Inulin Content of Taraxacum brevicorniculatum | Janina Post; Nicole van Deenen; Julia Fricke; Natalie Kowalski; David Wurbs; Hubert Schaller; Wolfgang Eisenreich; Claudia Huber; Richard M. Twyman; Dirk Prüfer; Christian Schulze Gronover | Plant Physiology | 2012 | 10.1104/pp.111.187880 | https://doi.org/10.1104/pp.111.187880 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1104/pp.111.187880 | 2026-10-03 |
| REF050 | Small rubber particle proteins from Taraxacum brevicorniculatum promote stress tolerance and influence the size and distribution of lipid droplets and artificial poly(cis‐1,4‐isoprene) bodies | Natalie Laibach; Sina Schmidl; Boje Müller; Maike Bergmann; Dirk Prüfer; Christian Schulze Gronover | The Plant Journal | 2018 | 10.1111/tpj.13829 | https://doi.org/10.1111/tpj.13829 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1111/tpj.13829 | 2026-10-03 |
| REF051 | Structure and biosynthesis of trans-polyisoprene from Eucommia ulmoides | Jitladda Tangpakdee; Yasuyuki Tanaka; Ken-ichi Shiba; Seiichi Kawahara; Koji Sakurai; Yoshihisa Suzuki | Phytochemistry | 1997 | 10.1016/s0031-9422(96)00806-0 | https://doi.org/10.1016/S0031-9422(96)00806-0 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1016/S0031-9422(96)00806-0 | 2026-10-03 |
| REF052 | Overexpression of an isopentenyl diphosphate isomerase gene to enhance trans-polyisoprene production in Eucommia ulmoides Oliver | Ren Chen; Yoko Harada; Takeshi Bamba; Yoshihisa Nakazawa; Koichiro Gyokusen | BMC Biotechnology | 2012 | 10.1186/1472-6750-12-78 | https://doi.org/10.1186/1472-6750-12-78 | Evidence in the original species; not experimental validation in Taraxacum kok-saghyz | https://api.crossref.org/works/10.1186/1472-6750-12-78 | 2026-10-03 |
Source checks were performed through 2026-10-03. Cite the accession, publication and version stated for the relevant record.