TkA08G305700 | RubberDandelionOmics

Gene overview

TkA08G305700

Reference: TK1151 Chr: Chr08 Coordinates: 79163620-79164274 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

465 bp · TkA08G305700|TK1151|cDNA

ATGCTCAGTACACAGGCTTCAGCTTTAATTCAAGGAAAAAGGGCAAGAGTTACATCAACATCTATTGTAAATGGACAACTCACCACCATAGATGATAGCCTTTCAGCCAGAAACCTAGAGATGAATGCAGTTCTTGGAAAGATTGCTTCTACAACACAAGAGTTGGCTCACTTCCATTCAGGAAATGAAGATGACATCTATCTTGCATACTCAGGCTTTCATCCATACTTGCTTCTTGACGCATTGTGTATGAAAGAGTT...

CDS

Download CDS FASTA

465 bp · TkA08G305700|TK1151|CDS

ATGCTCAGTACACAGGCTTCAGCTTTAATTCAAGGAAAAAGGGCAAGAGTTACATCAACATCTATTGTAAATGGACAACTCACCACCATAGATGATAGCCTTTCAGCCAGAAACCTAGAGATGAATGCAGTTCTTGGAAAGATTGCTTCTACAACACAAGAGTTGGCTCACTTCCATTCAGGAAATGAAGATGACATCTATCTTGCATACTCAGGCTTTCATCCATACTTGCTTCTTGACGCATTGTGTATGAAAGAGTT...

Protein

Download Protein FASTA

154 aa · TkA08G305700|TK1151|PROTEIN

MLSTQASALIQGKRARVTSTSIVNGQLTTIDDSLSARNLEMNAVLGKIASTTQELAHFHSGNEDDIYLAYSGFHPYLLLDALCMKELNQWFVKQLDTVQNYAIFFSFFSICSFCINLILYVDSDFWILTGWWQKRENPNVHGLILMTSQIPGER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G305700`
TK1151 ID	TkA08G305700
OH-1004 ID	LXL04_000781
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.700
Protein coverage (%)	TK1151 62.987 / OH-1004 15.595 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G305700

Location Chr08:79163620-79164274 (+)

Description Similar to AUG3: AUGMIN subunit 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48520`	Involved in microtubules reorganization during spindle and phragmoplast development.	Augmin plays a critical role in organizing the spindle and phragmoplast microtubule arrays in Arabidopsis.2011 · DOI: 10.1105/tpc.111.086892

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000781 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007098 centrosome cycle Biological Process

GO:0010968 regulation of microtubule nucleation Biological Process

GO:0031023 microtubule organizing center organization Biological Process

GO:0051225 spindle assembly Biological Process

GO:0051301 cell division Biological Process

GO:0080175 phragmoplast microtubule organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005813 centrosome Cellular Component

GO:0005815 microtubule organizing center Cellular Component

GO:0005819 spindle Cellular Component

KEGG gene cross-reference

ath:AT5G48520

dre:566923

hsa:79441

mmu:231123

xla:446808

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.392

Rank 1 · TkA08G305700 · TK1151

Nucleus0.355

Rank 2 · TkA08G305700 · TK1151

Mitochondrion0.180

Rank 3 · TkA08G305700 · TK1151

Cell membrane0.105

Rank 4 · TkA08G305700 · TK1151

Endoplasmic reticulum0.097

Rank 5 · TkA08G305700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14932HAUS-augmin32-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G305700	`PF14932`	HAUS-augmin3	2	99	4.3e-23	82.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WQE7`	Arabidopsis thaliana	sp\|Q0WQE7\|AUG3_ARATH AUGMIN subunit 3	71.100%	Swiss-Prot	Medium

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