TkA08G192730 | RubberDandelionOmics

Gene overview

TkA08G192730

Reference: TK1151 Chr: Chr08 Coordinates: 50384765-50390940 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4379 bp · TkA08G192730|TK1151|cDNA

AAAAAAGAGATGTGATATAAAAGAGAGCTCCAAAGTCTTTAAATTCACAGAAAGAAAAAGATAAACAGACAAAAGAGAAAGCGAAGGAGAAAGAGAAAGAGAAAGATAGACAGTCATAAATAAATTAAAAAACACAATAAAAAATGCGATCAGAAGCATCTGAGGAGAAGATAAAGAGAAGGAGAGAGCAGTGGGAATGGCACCAAATGCAAGGTCTTGAACTCGTCTCCGAAAACCCAAGTCCACCCTTGGGTTCGCAA...

CDS

Download CDS FASTA

3963 bp · TkA08G192730|TK1151|CDS

ATGCGATCAGAAGCATCTGAGGAGAAGATAAAGAGAAGGAGAGAGCAGTGGGAATGGCACCAAATGCAAGGTCTTGAACTCGTCTCCGAAAACCCAAGTCCACCCTTGGGTTCGCAAAACAGAGAAACTGAAACCAGAAGCCAAGAAATGGAAATGGAAGGAGAAAATAGTAAAAATGCCGAAAAAGATAAGGGAGTTTCAGTCGGATTTGGAGAGTTGTTTAGATTTGCCGATAGATTAGACTATGTGTTAATGGCGAT...

Protein

Download Protein FASTA

1320 aa · TkA08G192730|TK1151|PROTEIN

MRSEASEEKIKRRREQWEWHQMQGLELVSENPSPPLGSQNRETETRSQEMEMEGENSKNAEKDKGVSVGFGELFRFADRLDYVLMAIGTIGAFVHGCSLPIFLRFFADLVNSFGSNSNNIDKMTHEVLRYAFYFLIVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALSQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAIIGGIHTTTLAKLSSKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G192730`
TK1151 ID	TkA08G192730
OH-1004 ID	LXL04_032644
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 99.167 / OH-1004 94.718 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G192730

Location Chr08:50384765-50390940 (+)

Description Similar to ABCB1: ABC transporter B family member 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36910`	May participate in brassinosteroid export and related signaling.	Arabidopsis TWISTED DWARF1 regulates stamen elongation by differential activation of ABCB1,19-mediated auxin transport.2022 · DOI: 10.1093/jxb/erac185 Loss of Multiple ABCB Auxin Transporters Recapitulates the Major twisted dwarf 1 Phenotypes in Arabidopsis thaliana .2022 · DOI: 10.3389/fpls.2022.840260 Structure and function of the <i>Arabidopsis</i> ABC transporter ABCB19 in brassinosteroid export.2024 · DOI: 10.1126/science.adj4591 Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.2025 · DOI: 10.1016/j.xplc.2024.101181
`At3g28860`	May participate in brassinosteroid export and related signaling.	TWISTED DWARF1, a unique plasma membrane-anchored immunophilin-like protein, interacts with Arabidopsis multidrug resistance-like transporters AtPGP1 and AtPGP19.2003 · DOI: 10.1091/mbc.e02-10-0698 Connective auxin transport contributes to strigolactone-mediated shoot branching control independent of the transcription factor BRC1.2019 · DOI: 10.1371/journal.pgen.1008023 An ATP-Binding Cassette Transporter, ABCB19, Regulates Leaf Position and Morphology during Phototropin1-Mediated Blue Light Responses.2020 · DOI: 10.1104/pp.20.00223 Arabidopsis TWISTED DWARF1 regulates stamen elongation by differential activation of ABCB1,19-mediated auxin transport.2022 · DOI: 10.1093/jxb/erac185 Loss of Multiple ABCB Auxin Transporters Recapitulates the Major twisted dwarf 1 Phenotypes in Arabidopsis thaliana .2022 · DOI: 10.3389/fpls.2022.840260 Structure and function of the <i>Arabidopsis</i> ABC transporter ABCB19 in brassinosteroid export.2024 · DOI: 10.1126/science.adj4591 ABCB19 transporter: fostering brassinosteroid transport through membrane flexibility.2024 · DOI: 10.1016/j.tplants.2024.06.005 Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1.2025 · DOI: 10.1016/j.xplc.2024.101181 Quantitative analysis of the root posture of Arabidopsis thaliana mutants with wavy roots.2024 · DOI: 10.1017/qpb.2024.12
`At4g25960`	ABC transporter B family member 2.	No verified direct reference in this release
`At1g27940`	ABC transporter B family member 13.	No verified direct reference in this release
`At1g28010`	ABC transporter B family member 14.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032644 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008361 regulation of cell size Biological Process

GO:0009555 pollen development Biological Process

GO:0009624 response to nematode Biological Process

GO:0009637 response to blue light Biological Process

GO:0009639 response to red or far red light Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0009958 positive gravitropism Biological Process

KEGG gene cross-reference

ath:AT1G10680

ath:AT2G36910

ath:AT3G28860

ath:AT4G25960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.592

Rank 1 · TkA08G192730 · TK1151

Lysosome / Vacuole0.184

Rank 2 · TkA08G192730 · TK1151

Cytoplasm0.118

Rank 3 · TkA08G192730 · TK1151

Endoplasmic reticulum0.105

Rank 4 · TkA08G192730 · TK1151

Golgi apparatus0.060

Rank 5 · TkA08G192730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane86-357 aa

PF07693KAP_NTPase148-191 aa

PF13521AAA_28161-185 aa

PF12775AAA_7182-207 aa

PF13604AAA_30256-279 aa

PF07693KAP_NTPase425-462 aa

PF00005ABC_tran427-576 aa

PF13476AAA_23428-456 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G192730	`PF00664`	ABC_membrane	86	357	5.7e-111	371.3
TkA08G192730	`PF07693`	KAP_NTPase	148	191	0.12	12.2
TkA08G192730	`PF13521`	AAA_28	161	185	0.033	15.1
TkA08G192730	`PF12775`	AAA_7	182	207	0.0067	16.7
TkA08G192730	`PF13604`	AAA_30	256	279	0.0013	19.3
TkA08G192730	`PF07693`	KAP_NTPase	425	462	0.12	12.2
TkA08G192730	`PF00005`	ABC_tran	427	576	2.2e-72	242.8
TkA08G192730	`PF13476`	AAA_23	428	456	0.17	13.2
TkA08G192730	`PF05673`	DUF815	430	461	0.00064	19.7
TkA08G192730	`PF12775`	AAA_7	430	456	0.0067	16.7
TkA08G192730	`PF09818`	ABC_ATPase	432	459	1.7e-07	31.3
TkA08G192730	`PF20693`	YobI-ATPase	432	459	0.0075	16.6
TkA08G192730	`PF19557`	BrxC-PglY_N	432	461	0.036	14.1
TkA08G192730	`PF13481`	AAA_25	434	455	0.0028	18.0
TkA08G192730	`PF13555`	AAA_29	436	454	3.3e-06	27.5
TkA08G192730	`PF03193`	RsgA_GTPase	436	457	2.8e-05	24.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZR72`	Arabidopsis thaliana	sp\|Q9ZR72\|AB1B_ARATH ABC transporter B family member 1	84.800%	Swiss-Prot	High
`Q9LJX0`	Arabidopsis thaliana	sp\|Q9LJX0\|AB19B_ARATH ABC transporter B family member 19	54.400%	Swiss-Prot	High
`Q8LPK2`	Arabidopsis thaliana	sp\|Q8LPK2\|AB2B_ARATH ABC transporter B family member 2	49.800%	Swiss-Prot	Medium
`Q9C7F8`	Arabidopsis thaliana	sp\|Q9C7F8\|AB13B_ARATH ABC transporter B family member 13	49.000%	Swiss-Prot	Medium
`Q9C7F2`	Arabidopsis thaliana	sp\|Q9C7F2\|AB14B_ARATH ABC transporter B family member 14	49.500%	Swiss-Prot	Medium

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