TkA08G075950 | RubberDandelionOmics

Gene overview

TkA08G075950

Reference: TK1151 Chr: Chr08 Coordinates: 19502168-19502729 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

516 bp · TkA08G075950|TK1151|cDNA

GAACTCCAATTCCTTTCCTTCACCCACCCAATCGCTCTTTCATTCAAATTCAACAATCCACATCTCAAGTTATCTCAGATTCCGATTCGAACAACATCCATAACCACCAAAGCCTCCGCCTCCGCCGCAAACACCCCTTACGTACCGCCGTCGGTGACCGAGACATTATACGATCTGCTCGGTATATCGGAGACTGGTACACTCTCCGAGATCAAACAAGCGTATAAGCAAATGGCGTTGAAGTACCACCCGGATGTATC...

CDS

Download CDS FASTA

516 bp · TkA08G075950|TK1151|CDS

GAACTCCAATTCCTTTCCTTCACCCACCCAATCGCTCTTTCATTCAAATTCAACAATCCACATCTCAAGTTATCTCAGATTCCGATTCGAACAACATCCATAACCACCAAAGCCTCCGCCTCCGCCGCAAACACCCCTTACGTACCGCCGTCGGTGACCGAGACATTATACGATCTGCTCGGTATATCGGAGACTGGTACACTCTCCGAGATCAAACAAGCGTATAAGCAAATGGCGTTGAAGTACCACCCGGATGTATC...

Protein

Download Protein FASTA

171 aa · TkA08G075950|TK1151|PROTEIN

ELQFLSFTHPIALSFKFNNPHLKLSQIPIRTTSITTKASASAANTPYVPPSVTETLYDLLGISETGTLSEIKQAYKQMALKYHPDVSPPERTEEYTVRFIRVQEAYETLSDPEARSMYDSGNRGSRFEPRSDDKSRWKETWKVQISELRRRGRVDPEAGMTWAARIRSQRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G075950`
TK1151 ID	TkA08G075950
OH-1004 ID	LXL04_018654
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 94.737 / OH-1004 86.631 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G075950

Location Chr08:19502168-19502729 (+)

Description Similar to ATJ20: Chaperone protein dnaJ 20, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13830`	Plays a continuous role in plant development probably in the structural organization of compartments.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018654 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006260 DNA replication Biological Process

GO:0006457 protein folding Biological Process

GO:0009408 response to heat Biological Process

GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Biological Process

GO:0042026 protein refolding Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0031072 heat shock protein binding Molecular Function

GO:0051082 unfolded protein binding Molecular Function

KEGG gene cross-reference

ath:AT4G13830

nma:NMA0209

nmc:NMC0043

nme:NMB0059

nmn:NMCC_0067

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.947

Rank 1 · TkA08G075950 · TK1151

Mitochondrion0.057

Rank 2 · TkA08G075950 · TK1151

Nucleus0.034

Rank 3 · TkA08G075950 · TK1151

Cytoplasm0.020

Rank 4 · TkA08G075950 · TK1151

Cell membrane0.008

Rank 5 · TkA08G075950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226DnaJ56-119 aa

PF30912TIM141_C59-86 aa

PF23083FF_RHG35_4th70-119 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G075950	`PF00226`	DnaJ	56	119	2.8e-21	76.1
TkA08G075950	`PF30912`	TIM141_C	59	86	0.13	13.0
TkA08G075950	`PF23083`	FF_RHG35_4th	70	119	0.044	14.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SDN0`	Arabidopsis thaliana	sp\|Q9SDN0\|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic	50.000%	Swiss-Prot	High

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