TkA07G108980 | RubberDandelionOmics

Gene overview

TkA07G108980

Reference: TK1151 Chr: Chr07 Coordinates: 28245168-28252057 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3123 bp · TkA07G108980|TK1151|cDNA

GTAAAAGAGTAACCAATAAAAACATGCAAATTTTAGGTTACAGTGTCTTCAAATAAGGATATTCATTATAATATTATAATGTAGTACTATATGGCTACAGTGCCATCTCACTTCTTTTTCCACCTGGATACTTAGCACTGTTTTTTCCATTTTCATGTACGCAAAAACTCTCTCATCTTCAACGTCTATGTCCTTAAAAGAAGTCGATTACACTGGCTCATCAGAATCAGAAATGGAGAAATTAACCCACAAGCAAGGTT...

CDS

Download CDS FASTA

1383 bp · TkA07G108980|TK1151|CDS

ATGCAATTCCAGTTGATGCCCAACAATAAGGCGGTGTGGTTTGATACGACGTCGCTTGGACCATCTGCCCGGGAATTGGGCCCTAAGGGAAACTGCCCGAAAGCGCCCGAGATGAATTATAAGCCTGATTGCTTTGCACATGCCATTGCTTATGACGTTGAGACCGGGAAGAGCCGGACAATTTATATGGACGGAGAACCATGGTGTTCTTCGGGAGGCCTATGGCCCAACGGTGACTTGGTGGCAACTGGCGGTACTAG...

Protein

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460 aa · TkA07G108980|TK1151|PROTEIN

MQFQLMPNNKAVWFDTTSLGPSARELGPKGNCPKAPEMNYKPDCFAHAIAYDVETGKSRTIYMDGEPWCSSGGLWPNGDLVATGGTRGGGRSVRSLSLKNPNANFVEKKNVLADKRWYSTNQILEDGSAVVGGGGRMSFSYEIVPPHVLEFAPKKFNLKFLQETTVPKKAGARNVHREQPLPLPLSSPRRQRLALRQRPRHHLPTTHWSRSPPVPQIGRRISKLPTFRYGRPLPDNHWATRYKQRWWFVAAILQTRTPPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G108980`
TK1151 ID	TkA07G108980
OH-1004 ID	LXL04_019012
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	51.000
Protein coverage (%)	TK1151 99.783 / OH-1004 35.276 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G108980

Location Chr07:28245168-28252057 (-)

Description Similar to Putative aldehyde oxidase Art an 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67290`	Catalyzes the oxidation of aldehydes to the corresponding carboxylate by coupling the reaction to the reduction of dioxygen to hydrogen peroxide.	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana.2011 · DOI: 10.1105/tpc.110.082651

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019012 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004031 aldehyde oxidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G67290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.840

Rank 1 · TkA07G108980 · TK1151

Cytoplasm0.051

Rank 2 · TkA07G108980 · TK1151

Mitochondrion0.039

Rank 3 · TkA07G108980 · TK1151

Endoplasmic reticulum0.027

Rank 4 · TkA07G108980 · TK1151

Cell membrane0.027

Rank 5 · TkA07G108980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07250Glyoxal_oxid_N1-167 aa

PF13418Beta-prop_TYW4125-135 aa

PF07250Glyoxal_oxid_N261-402 aa

PF13418Beta-prop_TYW4273-349 aa

PF09118GO-like_E_set344-375 aa

PF09118GO-like_E_set419-459 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G108980	`PF07250`	Glyoxal_oxid_N	1	167	4.5e-99	332.5
TkA07G108980	`PF13418`	Beta-prop_TYW4	125	135	0.26	11.9
TkA07G108980	`PF07250`	Glyoxal_oxid_N	261	402	4.5e-99	332.5
TkA07G108980	`PF13418`	Beta-prop_TYW4	273	349	0.26	11.9
TkA07G108980	`PF09118`	GO-like_E_set	344	375	0.00037	21.5
TkA07G108980	`PF09118`	GO-like_E_set	419	459	0.00037	21.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG4`	Arabidopsis thaliana	sp\|Q9FYG4\|GLOX1_ARATH Aldehyde oxidase GLOX1	36.900%	Swiss-Prot	Medium

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