TkA07G010420 | RubberDandelionOmics

Gene overview

TkA07G010420

Reference: TK1151 Chr: Chr07 Coordinates: 2878957-2879574 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

618 bp · TkA07G010420|TK1151|cDNA

ATGGTTCAACTAGTTTTCTCTTACTTGGTTCTCTCCCTCACAATCTTCGGGTTTTGTGGGATAGCCGAATCTCGTTCTTCTGTTGCACGGGTGTATCTACAGACACAGTGTCAAACTGCGATATATCGCGATCTATGCGTTCGAACTCTCTTACCTTATGTGTCAAAAACGAAAACTGTACCAGGCCCACAACAACTGGCTAAGATTACTTTAGCGGTGTGTTTGTCTAAAGCTAGACAAACAAAGGCGTATGTGGATAT...

CDS

Download CDS FASTA

618 bp · TkA07G010420|TK1151|CDS

ATGGTTCAACTAGTTTTCTCTTACTTGGTTCTCTCCCTCACAATCTTCGGGTTTTGTGGGATAGCCGAATCTCGTTCTTCTGTTGCACGGGTGTATCTACAGACACAGTGTCAAACTGCGATATATCGCGATCTATGCGTTCGAACTCTCTTACCTTATGTGTCAAAAACGAAAACTGTACCAGGCCCACAACAACTGGCTAAGATTACTTTAGCGGTGTGTTTGTCTAAAGCTAGACAAACAAAGGCGTATGTGGATAT...

Protein

Download Protein FASTA

205 aa · TkA07G010420|TK1151|PROTEIN

MVQLVFSYLVLSLTIFGFCGIAESRSSVARVYLQTQCQTAIYRDLCVRTLLPYVSKTKTVPGPQQLAKITLAVCLSKARQTKAYVDMVAKQSNKAKSSQAVQECSRQINNGVNQITLSVKEFQHMGKDVEENFPLHEDNMQSWVSAALTDIDMCIDGILGDVIGGKEKAIMKAKILNVKQLASNSLALLTRYTLRHRASHIVKNP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G010420`
TK1151 ID	TkA07G010420
OH-1004 ID	LXL04_022747
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	62.700
Protein coverage (%)	TK1151 96.585 / OH-1004 96.585 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G010420

Location Chr07:2878957-2879574 (+)

Description Similar to PMEI9: Pectinesterase inhibitor 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62770`	Pectin methylesterase (PME) inhibitor that probably targets root-expressed PME and PME3 in a moderate pH-dependent manner, mainly in slightly acidic conditions (pH 6.3 and 5.0) and to some extent at pH 7.5.	Combined Experimental and Computational Approaches Reveal Distinct pH Dependence of Pectin Methylesterase Inhibitors.2017 · DOI: 10.1104/pp.16.01790
`At1g62760`	Pectin methylesterase (PME) inhibitor involved in the maintenance of cell wall integrity in response to necrotrophic pathogens.	No verified direct reference in this release
`At3g14300`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At2g47670`	Pectin methylesterase (PME) inhibitor that targets PME from seeds and modulates PME activity and pectin methylesterification during seed germination.	PECTIN METHYLESTERASE INHIBITOR6 promotes Arabidopsis mucilage release by limiting methylesterification of homogalacturonan in seed coat epidermal cells.2013 · DOI: 10.1105/tpc.112.106575

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022747 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009641 shade avoidance Biological Process

GO:0009827 plant-type cell wall modification Biological Process

GO:0071669 plant-type cell wall organization or biogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G62760

ath:AT1G62770

ath:AT3G47380

ath:AT4G25260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.511

Rank 1 · TkA07G010420 · TK1151

Endoplasmic reticulum0.180

Rank 2 · TkA07G010420 · TK1151

Cytoplasm0.128

Rank 3 · TkA07G010420 · TK1151

Cell membrane0.091

Rank 4 · TkA07G010420 · TK1151

Lysosome / Vacuole0.090

Rank 5 · TkA07G010420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22056ORF239-like13-60 aa

PF04043PMEI33-188 aa

PF07817GLE178-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G010420	`PF22056`	ORF239-like	13	60	0.13	13.1
TkA07G010420	`PF04043`	PMEI	33	188	8.8e-29	101.4
TkA07G010420	`PF07817`	GLE1	78	133	0.033	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SI72`	Arabidopsis thaliana	sp\|Q9SI72\|PMEI9_ARATH Pectinesterase inhibitor 9	34.000%	Swiss-Prot	Medium
`Q9SI74`	Arabidopsis thaliana	sp\|Q9SI74\|PMI10_ARATH Pectinesterase inhibitor 10	29.000%	Swiss-Prot	Low
`Q9LUL8`	Arabidopsis thaliana	sp\|Q9LUL8\|PME26_ARATH Putative pectinesterase/pectinesterase inhibitor 26	23.600%	Swiss-Prot	Low
`O22244`	Arabidopsis thaliana	sp\|O22244\|PMEI6_ARATH Pectinesterase inhibitor 6	25.500%	Swiss-Prot	Low

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