TkA07G001520 | RubberDandelionOmics

Gene overview

TkA07G001520

Reference: TK1151 Chr: Chr07 Coordinates: 395936-399445 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1437 bp · TkA07G001520|TK1151|cDNA

GTAAAAATTAGTTCCATAATCAATTAATTTTAGCGGGTTTTACAGTCCAATTGTCATTTTTATTTCCAAGTTCCAACCAACTCTTCCTGGCTTTGCTTGTGCTCAACAAAAATTAACACCCTTTCTCTCTCTCTCACTCACCCATCTCTCCCCTATAATATATTCTCTCTTTCACCAAACCCCTTTATTACTTCCAAATCTAATCCAGACAACAAGCATTTGATGCTTCCCATTCCAGCTAACTGAAAAATTTATTCCAA...

CDS

Download CDS FASTA

897 bp · TkA07G001520|TK1151|CDS

ATGGAGGTGGAACAGTCAAATCAACCAATGGCGTTCCATGAGCCGTCAATGGAACAGAGCATTAGCTTCGTTACAGCTCTTCAGGAACTAAAAAATCTAAGGCCTCAACTTTATTCAGCAGCTGATTATTGTGAAAAATCTTATCTTCATAGCGAACAAAAACAAGTGGTTCTTGATAATTTAAAAGATTATGCCATACGGGCACTTGTAAATGCTGTTGACCATCTTGGCACAGTTGCTTACAAATTGACTGACATTTT...

Protein

Download Protein FASTA

298 aa · TkA07G001520|TK1151|PROTEIN

MEVEQSNQPMAFHEPSMEQSISFVTALQELKNLRPQLYSAADYCEKSYLHSEQKQVVLDNLKDYAIRALVNAVDHLGTVAYKLTDILEQQSLEISATGLHVACLHQQILTCQTYTDREALRQQELLAVVPRHHKHYSLPKSVSKKVHFSPQTKTDGKQSQFHSRPRQFSSGTPPANTLCWHLASETKSTLKTTSRSMSIDDPKTSTHAPISNGSDGVRTKSSEPHLQLRNVGPASSMAIQTLGISRQDVMEGSGPMMSFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G001520`
TK1151 ID	TkA07G001520
OH-1004 ID	LXL04_026678
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G001520

Location Chr07:395936-399445 (+)

Description Similar to ABIL1: Protein ABIL1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46225`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release
`At5g24310`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release
`At3g49290`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0622700`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release
`Os05g0585400`	Involved in regulation of actin and microtubule organization.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026678 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010090 trichome morphogenesis Biological Process

GO:0045010 actin nucleation Biological Process

GO:0048364 root development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0015630 microtubule cytoskeleton Cellular Component

GO:0031209 SCAR complex Cellular Component

KEGG gene cross-reference

ath:AT2G46225

ath:AT3G49290

ath:AT5G24310

dosa:Os01g0622700

dosa:Os05g0585400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594

Rank 1 · TkA07G001520 · TK1151

Nucleus0.347

Rank 2 · TkA07G001520 · TK1151

Cell membrane0.130

Rank 3 · TkA07G001520 · TK1151

Endoplasmic reticulum0.054

Rank 4 · TkA07G001520 · TK1151

Golgi apparatus0.054

Rank 5 · TkA07G001520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27594ABI23-90 aa

PF29583HEN1_C52-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G001520	`PF27594`	ABI	23	90	1.6e-17	64.0
TkA07G001520	`PF29583`	HEN1_C	52	95	0.29	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S8M5`	Arabidopsis thaliana	sp\|Q8S8M5\|ABIL1_ARATH Protein ABIL1	54.000%	Swiss-Prot	High
`Q6NMC6`	Arabidopsis thaliana	sp\|Q6NMC6\|ABIL3_ARATH Protein ABIL3	50.000%	Swiss-Prot	Low
`Q9M3A3`	Arabidopsis thaliana	sp\|Q9M3A3\|ABIL2_ARATH Protein ABIL2	49.300%	Swiss-Prot	Low
`Q9AXA6`	Oryza sativa subsp. japonica	sp\|Q9AXA6\|ABIL1_ORYSJ Probable protein ABIL1	51.400%	Swiss-Prot	High
`Q6I588`	Oryza sativa subsp. japonica	sp\|Q6I588\|ABIL4_ORYSJ Probable protein ABIL4	48.300%	Swiss-Prot	Medium

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