TkA06G363470 | RubberDandelionOmics

Gene overview

TkA06G363470

Reference: TK1151 Chr: Chr06 Coordinates: 90003048-90004813 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1241 bp · TkA06G363470|TK1151|cDNA

AAAAAAAAAAAAATATTTGACAATGGGTTCAGTGGGTCGACAGACACCCTACACTCTAACGACAAGTCACTATTTGCAATTTGGACTTTTCCGTTTCCACCGTTAAAAATGGTGTTGAGTTGAAGGAGTCGGCGGTAAGCGTAAAAGTAACCGGCACCCACCTGAGTCCATGTCCCGCGCTAATTGTGAAGAAGAAGTAAACCCAATGGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAACGGTGA...

CDS

Download CDS FASTA

858 bp · TkA06G363470|TK1151|CDS

ATGTCCCGCGCTAATTGTGAAGAAGAAGTAAACCCAATGGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAACGGTGATAGGGATGGGATCTTACAAAGGAAAAGTTCGGATGGTGAGAGGGGATCCCTCGGATGAGATGATGTTGCTTTGGGGGCTTCAACAGCCGACGTTCTCTAAACCCAATGCTTTCGTTGCTCAGCGTTCTCTTAACCTCTCCCTCGATTCTTGCGGTCGTCGTCTCTCCAT...

Protein

Download Protein FASTA

285 aa · TkA06G363470|TK1151|PROTEIN

MSRANCEEEVNPMEDEEEEEEEEEAEEETVIGMGSYKGKVRMVRGDPSDEMMLLWGLQQPTFSKPNAFVAQRSLNLSLDSCGRRLSISQSPSSLGTPGVTGSVMWDSGIVLGKFLENAVETGLLVLQGKKVVEVGAGCGLVGCIAALLGSQVILTDMPDRLRLLKKNIEDNLYGDVRGHATVTELTWGDHPDPQLLQPLPDFVIGSDVIYSEEAVTDLLDTLLELSGPETTIILAGELRNDAILEYFMEVAMEDFMIGRV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G363470`
TK1151 ID	TkA06G363470
OH-1004 ID	LXL04_023340
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G363470`
Location	Chr06:90003048-90004813 (-)
Description	Similar to METTL21A: Protein N-lysine methyltransferase METTL21A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_023340` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006479 protein methylation Biological Process GO:0018022 peptidyl-lysine methylation Biological Process GO:0018023 peptidyl-lysine trimethylation Biological Process GO:0032780 negative regulation of ATP-dependent activity Biological Process GO:1903333 negative regulation of protein folding Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005694 chromosome Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005813 centrosome Cellular Component GO:0005829 cytosol Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0008168 methyltransferase activity Molecular Function
KEGG gene cross-reference	hsa:151194 hsa:79609 mmu:100504608 xtr:100038275 xtr:549414 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.573

Rank 1 · TkA06G363470 · TK1151

Nucleus0.495

Rank 2 · TkA06G363470 · TK1151

Cell membrane0.074

Rank 3 · TkA06G363470 · TK1151

Endoplasmic reticulum0.067

Rank 4 · TkA06G363470 · TK1151

Mitochondrion0.062

Rank 5 · TkA06G363470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29089Protamine-314-28 aa

PF10294Methyltransf_16100-250 aa

PF06325PrmA125-239 aa

PF13489Methyltransf_23127-256 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G363470	`PF29089`	Protamine-3	14	28	1.8	9.4
TkA06G363470	`PF10294`	Methyltransf_16	100	250	5.7e-33	114.8
TkA06G363470	`PF06325`	PrmA	125	239	0.054	13.7
TkA06G363470	`PF13489`	Methyltransf_23	127	256	0.014	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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