TkA06G238310 | RubberDandelionOmics

Gene overview

TkA06G238310

Reference: TK1151 Chr: Chr06 Coordinates: 61087199-61090868 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2444 bp · TkA06G238310|TK1151|cDNA

AAAACTACCGATTTTGAGTTTTGACCCACCACTCCGGTTCCTTTTCTTATTGGGGACACGTATTATAAACCCCTCGAAGAGAGAAAGATGTGGAAACCAGTTTAAGGAACACAGACAAGGAATTCTTTTTAATTATTGCTACTCCACCAAACATATCTCCATCTTCAGCCGCCGCCGCCGCCGCGGTTCTCTGATACCATTCAACCCTAGACTCCCAAGGTACATCCCTCTTTCTCTTCCTTCTTTCCAGCTCTCTTAAT...

CDS

Download CDS FASTA

1653 bp · TkA06G238310|TK1151|CDS

ATGGCGACACCTACATACCTATCTGGAGCCAAGACTTCGTTCTATCTTTCCAATACCGCTTCCTACTCCCGATCCATGTGTTCACACCATCAGAAGCTCAGTTTTGCTTCATCGGTTGCTTCATTTGGTCGAGCGTGTAGAGTGGTACAGGTTCCAACTCCAGGAAAGGGAAGAACTCTGAGCGTTGTTTGCAATGTACAAAACGTAGATGTTCTTACGAGAAGTGAACCCGAGAGTCAATTAAGCAAACAGCTATCATG...

Protein

Download Protein FASTA

550 aa · TkA06G238310|TK1151|PROTEIN

MATPTYLSGAKTSFYLSNTASYSRSMCSHHQKLSFASSVASFGRACRVVQVPTPGKGRTLSVVCNVQNVDVLTRSEPESQLSKQLSCVMKFGGSSVASAERMKEVADLILSFPEESPVIVLSAMGKTTNKLISAGEKAASCVSSVSEMDELAFVKELHYRTVEELGLEKTLIEDHLEKLERLLNGIAVLKEFTPRARDYLVSFGECMSTRIFSAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLNGDW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G238310`
TK1151 ID	TkA06G238310
OH-1004 ID	LXL04_023704
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 84.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G238310

Location Chr06:61087199-61090868 (+)

Description Similar to AK2: Aspartokinase 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g14060`	Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.	No verified direct reference in this release
`At3g02020`	Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.	Identification of a monofunctional aspartate kinase gene of Arabidopsis thaliana with spatially and temporally regulated expression.2001 · DOI: 10.1266/ggs.76.189
`At5g13280`	Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023704 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006531 aspartate metabolic process Biological Process

GO:0008652 amino acid biosynthetic process Biological Process

GO:0009088 L-threonine biosynthetic process Biological Process

GO:0009089 L-lysine biosynthetic process via diaminopimelate Biological Process

GO:0009090 L-homoserine biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004072 aspartate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G02020

ath:AT5G13280

ath:AT5G14060

ecj:JW3984

eco:b4024

ecoc:C3026_21735

mja:MJ_0571

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.866

Rank 1 · TkA06G238310 · TK1151

Cytoplasm0.089

Rank 2 · TkA06G238310 · TK1151

Cell membrane0.071

Rank 3 · TkA06G238310 · TK1151

Nucleus0.056

Rank 4 · TkA06G238310 · TK1151

Peroxisome0.051

Rank 5 · TkA06G238310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00696AA_kinase87-367 aa

PF01918Alba107-136 aa

PF01842ACT231-248 aa

PF01918Alba382-398 aa

PF13840ACT_7395-440 aa

PF22468ACT_9403-446 aa

PF01842ACT404-471 aa

PF22468ACT_9482-541 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G238310	`PF00696`	AA_kinase	87	367	3.7e-47	161.7
TkA06G238310	`PF01918`	Alba	107	136	0.17	12.4
TkA06G238310	`PF01842`	ACT	231	248	7.2e-09	36.0
TkA06G238310	`PF01918`	Alba	382	398	0.17	12.4
TkA06G238310	`PF13840`	ACT_7	395	440	4.9e-07	30.2
TkA06G238310	`PF22468`	ACT_9	403	446	3.4e-24	85.0
TkA06G238310	`PF01842`	ACT	404	471	7.2e-09	36.0
TkA06G238310	`PF22468`	ACT_9	482	541	3.4e-24	85.0
TkA06G238310	`PF13840`	ACT_7	482	539	4.9e-07	30.2
TkA06G238310	`PF01842`	ACT	494	525	7.2e-09	36.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23653`	Arabidopsis thaliana	sp\|O23653\|AK2_ARATH Aspartokinase 2, chloroplastic	79.800%	Swiss-Prot	High
`Q9S702`	Arabidopsis thaliana	sp\|Q9S702\|AK3_ARATH Aspartokinase 3, chloroplastic	78.000%	Swiss-Prot	High
`Q9LYU8`	Arabidopsis thaliana	sp\|Q9LYU8\|AK1_ARATH Aspartokinase 1, chloroplastic	76.000%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card