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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G202260
Reference: TK1151 Chr: Chr06 Coordinates: 52547690-52550248 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1270 bp · TkA06G202260|TK1151|cDNA

AAGAACTCACGCTTTTCACACACACTCCTCTCCTTCTTATATCCACCACCAACTCATACTATTCCGGTCATCGGTCCATCTCTAGGGTTTCCAATGGCATATGGCCGTACTGACGCACGCAGACACATGTTCGATGGCGGTGTCAACTTTATCTCCGACCAAAACCCTCACACTGGTTATCAACAGCATCCGCCTCAACGATTTTCCAATGTCGGGATTCATGAATCGATGCGCCATGATTTTGTTCCTGGTGGTTATGG...

CDS

Download CDS FASTA

1032 bp · TkA06G202260|TK1151|CDS

AAGAACTCACGCTTTTCACACACACTCCTCTCCTTCTTATATCCACCACCAACTCATACTATTCCGGTCATCGGTCCATCTCTAGGGTTTCCAATGGCATATGGCCGTACTGACGCACGCAGACACATGTTCGATGGCGGTGTCAACTTTATCTCCGACCAAAACCCTCACACTGGTTATCAACAGCATCCGCCTCAACGATTTTCCAATGTCGGGATTCATGAATCGATGCGCCATGATTTTGTTCCTGGTGGTTATGG...

Protein

Download Protein FASTA

343 aa · TkA06G202260|TK1151|PROTEIN

KNSRFSHTLLSFLYPPPTHTIPVIGPSLGFPMAYGRTDARRHMFDGGVNFISDQNPHTGYQQHPPQRFSNVGIHESMRHDFVPGGYGNWSRNFSMQQYYPLPKSDKVCLVFTHTGFCSFRDRCRFRHPTPENAQVDAEENKGKPSETESEKSRPVIPCKFYPTGVCKNGEKCKFDHSITEFKQIFNIMGLPIRLGEQDCSFYMRNGTCNFGKSCKFHHPDPIIYHEPDQAYEDYFEYENGASGFTDGEYGIGYPDPNQRY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G202260
TK1151 IDTkA06G202260
OH-1004 IDLXL04_023875
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 89.213 / OH-1004 97.764
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G202260
LocationChr06:52547690-52550248 (-)
DescriptionSimilar to At3g48440: Zinc finger CCCH domain-containing protein 43
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g48440 Zinc finger CCCH domain-containing protein 43. No verified direct reference in this release
At3g12680 Involved in flower development.
HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein.2001 · DOI: 10.1105/tpc.010201
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana.2003 · DOI: 10.1016/s1534-5807(02)00399-4
At5g63260 Zinc finger CCCH domain-containing protein 67. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0616400 Zinc finger CCCH domain-containing protein 8. No verified direct reference in this release
Os11g0472000 Zinc finger CCCH domain-containing protein 63. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023875 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004518 nuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016787 hydrolase activity Molecular Function
KEGG gene cross-reference
ath:AT1G04990
ath:AT3G48440
ath:AT5G63260
dosa:Os01g0258700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.600
Rank 1 · TkA06G202260 · TK1151
Cytoplasm0.481
Rank 2 · TkA06G202260 · TK1151
Endoplasmic reticulum0.040
Rank 3 · TkA06G202260 · TK1151
Cell membrane0.040
Rank 4 · TkA06G202260 · TK1151
Mitochondrion0.028
Rank 5 · TkA06G202260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25585zf-CCCH_DUS3L4-13 aa
PF18044zf-CCCH_44-7 aa
PF16131Torus104-136 aa
PF08119Toxin_31104-112 aa
PF25585zf-CCCH_DUS3L106-127 aa
PF15663zf-CCCH_3107-127 aa
PF22623zf-CCCH_9108-127 aa
PF25261zf-CCCH_PARP12108-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G202260PF25585zf-CCCH_DUS3L4139.2e-1142.2
TkA06G202260PF18044zf-CCCH_4474.4e-0730.2
TkA06G202260PF16131Torus1041365e-0937.4
TkA06G202260PF08119Toxin_311041124.67.8
TkA06G202260PF25585zf-CCCH_DUS3L1061279.2e-1142.2
TkA06G202260PF15663zf-CCCH_31071270.001819.2
TkA06G202260PF22623zf-CCCH_91081270.01815.5
TkA06G202260PF25261zf-CCCH_PARP121081270.08613.8
TkA06G202260PF18044zf-CCCH_41111284.4e-0730.2
TkA06G202260PF00642zf-CCCH1131288.3e-1761.4
TkA06G202260PF18345zf_CCCH_41131273.1e-0937.3
TkA06G202260PF25542zf-CCCH_121141270.003717.6
TkA06G202260PF14608zf-CCCH_21151282.3e-0834.9
TkA06G202260PF25584zf-CCCH_RBM221151261.49.7
TkA06G202260PF23261zf-CCCH_111161271.98.8
TkA06G202260PF29102Su_sable_N1171320.002219.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9STM4Arabidopsis thalianasp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 4369.000%Swiss-ProtLow
Q941Q3Arabidopsis thalianasp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 3743.600%Swiss-ProtLow
Q5RJC5Arabidopsis thalianasp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 6757.600%Swiss-ProtLow
Q5ZDJ6Oryza sativa subsp. japonicasp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 830.500%Swiss-ProtLow
Q2R4J4Oryza sativa subsp. japonicasp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 6365.500%Swiss-ProtLow

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