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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G029790
Reference: TK1151 Chr: Chr06 Coordinates: 8067672-8070505 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1775 bp · TkA06G029790|TK1151|cDNA

ATTCGCTCGTCAAGTCTCCTTCAACCTGTTTTTTCACGTTTCTAGCATAAGTTCATGATCATCATATTCATTTTGTCAATTTGCTTATTCACCACAGATGTCTTCGAGCAAATATTCTCGAAAAAAATATAAAAAACACAATAATTTCATGTATAGAGTATTCCAAAATCGACTAAAATAATTGGAGTGCGGAGTAATAACCAAAATTATTCCCAGTGCTCCACCCCTTTTGTTTGAGTATCTTCTACGCTTATTGAAGA...

CDS

Download CDS FASTA

1293 bp · TkA06G029790|TK1151|CDS

ATGCAAACATCCCACGAAATCAGCAACTCAGGTGCCGATGACGACGGCAGGAATGTTTCAGAGGTTGATACGAATGTGAAGGAATCCACAAACGAAGTTAAAAACTATGGAAAAAGCACTCGTTTTTCGGATTTATCCCTCAATATACCTCCAAGACACGCACATTTTGGCAGTAATCGTCGCGATAAAGCTTCACTCCAGTCACCAGGTATCTCATCTAATGGAACTCCATCTTCACGGGGCATTTTCCGAGGTTTAAG...

Protein

Download Protein FASTA

430 aa · TkA06G029790|TK1151|PROTEIN

MQTSHEISNSGADDDGRNVSEVDTNVKESTNEVKNYGKSTRFSDLSLNIPPRHAHFGSNRRDKASLQSPGISSNGTPSSRGIFRGLSFKKKDHIPPNGESSSLLTSDSNAPPPESPLVPNTASNLYWKRCTSLPVKHASNPSPSATTPISARTYNEQQKLQIGAAQASVSRSLSVPGRNIVIVRSISFAARKDNDQIDSVDDEIGGVEVENDEEIDEEEAICRICFDPCDEGNQLKMECSCKGALRLVHEECAVKWFSVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G029790
TK1151 IDTkA06G029790
OH-1004 IDLXL04_026050
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G029790
LocationChr06:8067672-8070505 (+)
DescriptionSimilar to SUD1: Probable E3 ubiquitin ligase SUD1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026050 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0008299 isoprenoid biosynthetic process Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0010025 wax biosynthetic process Biological Process
GO:0010143 cutin biosynthetic process Biological Process
GO:0010345 suberin biosynthetic process Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0036503 ERAD pathway Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0045541 negative regulation of cholesterol biosynthetic process Biological Process
GO:0070936 protein K48-linked ubiquitination Biological Process
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway Biological Process
KEGG gene cross-reference
ath:AT4G34100
dre:100000640
hsa:10299
mmu:223455
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.259
Rank 1 · TkA06G029790 · TK1151
Cell membrane0.236
Rank 2 · TkA06G029790 · TK1151
Cytoplasm0.202
Rank 3 · TkA06G029790 · TK1151
Nucleus0.188
Rank 4 · TkA06G029790 · TK1151
Golgi apparatus0.168
Rank 5 · TkA06G029790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12906RINGv222-268 aa
PF13639zf-RING_2222-268 aa
PF17120zf-RING_16240-269 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G029790PF12906RINGv2222681.1e-1351.8
TkA06G029790PF13639zf-RING_22222680.02315.6
TkA06G029790PF17120zf-RING_162402691.29.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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