Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1318 bp · TkA06G022900|TK1151|cDNA
GTCAGAACTGCATGTTAACAAATAGTCAAGGGGCCATTTCTACAACTTAATTATCTAGCGACATCTGTTCCGACTACCATTTTGGCGGTGACCTTTTCTGATTTCCCCATTTCAGATACAAAACTAATAGGGCATCAATTTGGGTGTTGCGATCCGGTGGCTATCGAAAATCTCTATACTGTCAATTATCGCTCATACTTGTTGGTGTTTTGAGCGACTTCAGGGTGTAAAGAAGGATGGGTTGTAAAGGTTTTTTGGAG...
843 bp · TkA06G022900|TK1151|CDS
ATGGGTTGTAAAGGTTTTTTGGAGTGCCTGCTGAAGCTCCTGAACTTCATGTTGACTCTTCTAGGTCTCGCCATGGTTGGCTATGGAGTATACTTGTTTATTATGTACAGAAATGCAACCGATGACATGGATGCTGTAGCATTCAACGAAGGATTAATACAGCTTGGACGCCCTATGCTAATGGCTGTGTCACTCTCCAACAACAACTTCTTTGATCAGTTGCCTACTGCATGGTTCATATATCTATTCATTGGTTTTGG...
Protein
Download Protein FASTA280 aa · TkA06G022900|TK1151|PROTEIN
MGCKGFLECLLKLLNFMLTLLGLAMVGYGVYLFIMYRNATDDMDAVAFNEGLIQLGRPMLMAVSLSNNNFFDQLPTAWFIYLFIGFGAIVFVISCFGCIGAATRSGCCLTCYSLLLILLILVEVGCAAFIFFDKSWKDEIPKDETGQFNAIYGFLKKNWNICKWVALGAVIFEALVFLLALMVRAANAPAEYDSDDEYISGPRQQRQPLIGRQAVPPTVTGVPVTGPLDSRPSRNDAWSARMREKYGLDTSEFTYNPNEA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G022900 |
|---|---|
| TK1151 ID | TkA06G022900 |
| OH-1004 ID | LXL04_026182 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G022900 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:6284094-6286372 (-) | |||||||||
| Description | Similar to TOM2A: Tobamovirus multiplication protein 2A | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009705 plant-type vacuole membrane Cellular Component GO:0016020 membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G32400 ath:AT2G20230 ath:AT2G20740 ath:AT4G28770 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00335Tetraspanin8-136 aaPF27656Prd_NiFe_hyd_3_EhaI25-34 aaPF27656Prd_NiFe_hyd_3_EhaI75-94 aaPF27656Prd_NiFe_hyd_3_EhaI119-136 aaPF00335Tetraspanin148-182 aaPF27656Prd_NiFe_hyd_3_EhaI159-196 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G022900 | PF00335 | Tetraspanin | 8 | 136 | 1.1e-16 | 62.0 |
| TkA06G022900 | PF27656 | Prd_NiFe_hyd_3_EhaI | 25 | 34 | 1.4 | 9.8 |
| TkA06G022900 | PF27656 | Prd_NiFe_hyd_3_EhaI | 75 | 94 | 1.4 | 9.8 |
| TkA06G022900 | PF27656 | Prd_NiFe_hyd_3_EhaI | 119 | 136 | 1.4 | 9.8 |
| TkA06G022900 | PF00335 | Tetraspanin | 148 | 182 | 1.1e-16 | 62.0 |
| TkA06G022900 | PF27656 | Prd_NiFe_hyd_3_EhaI | 159 | 196 | 1.4 | 9.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.