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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G432100
Reference: TK1151 Chr: Chr05 Coordinates: 107752623-107759359 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3726 bp · TkA05G432100|TK1151|cDNA

GGGTTCACTTATACAACTTTCAGTATCGTTTCCCCTTTTGTTCTTCGCAATTCGCAAACAAGACTCCATGGTTAGACGCCGGCGTTAGATAATTGAAAGTACAGGACGACGCCGTTTCCGATTCCGATTCCGATTCCGGTCCTGACTCCGGAGACGTTTCACCTCTATAACGCCCAATCCTTGATCTGATTTCTCCCTTCCTTCCTGGACCTCTCTCTTAGACTCTTACACGCGCATCACTTAAAATGTTCACACAGTTC...

CDS

Download CDS FASTA

3510 bp · TkA05G432100|TK1151|CDS

ATGTTCACACAGTTCGGCACCACCGCCGAGAACTTTAGCAAGGCGTCAACAATGGTGTTTCGGATCGGAACAGACGCTCACCTCTATGACGATCCTGACGATGTCAGTATTACACCTCTTCTGGACAGCAAATTCGACTCTGAAAAATGCGAAGCTCTTAAACGATTGCTCGCTCTGATTGCCCAAGGCTTAGATGTCGTTAAGAATGTTGCATCTCAGTCATTGGAGGTTAAGAAGCTTGTTTACTTATACTTGCTGCA...

Protein

Download Protein FASTA

1169 aa · TkA05G432100|TK1151|PROTEIN

MFTQFGTTAENFSKASTMVFRIGTDAHLYDDPDDVSITPLLDSKFDSEKCEALKRLLALIAQGLDVVKNVASQSLEVKKLVYLYLLHYAERQVDNILTLNQTLRPNEALLSINIFQRDLGDQNPLVRAWALRTMAGIRLHVISPLVLVAVRKCARDPSVYVRKCAANALPKLNDLRLEENEASIIEIIGILLNDNSPGVVGAAAAAFASICPNNLPLIGRNYTRLCEMLPDVEEWGQIILIGILLRYVISKRGLAKESIM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G432100
TK1151 IDTkA05G432100
OH-1004 IDLXL04_021931
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G432100
LocationChr05:107752623-107759359 (+)
DescriptionSimilar to AP3BA: AP3-complex subunit beta-A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g55480 Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated.
The AP-3 β adaptin mediates the biogenesis and function of lytic vacuoles in Arabidopsis.2010 · DOI: 10.1105/tpc.110.075424
The AP-3 adaptor complex is required for vacuolar function in Arabidopsis.2011 · DOI: 10.1038/cr.2011.99

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021931 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006882 intracellular zinc ion homeostasis Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006896 Golgi to vacuole transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0035654 clathrin-coated vesicle cargo loading, AP-3-mediated Biological Process
GO:0048499 synaptic vesicle membrane organization Biological Process
GO:0051453 regulation of intracellular pH Biological Process
GO:0065003 protein-containing complex assembly Biological Process
GO:0080171 lytic vacuole organization Biological Process
GO:0099180 zinc ion import into synaptic vesicle Biological Process
GO:0005634 nucleus Cellular Component
GO:0005769 early endosome Cellular Component
KEGG gene cross-reference
ath:AT3G55480
bta:767602
cfa:403459
hsa:8120
mmu:11775
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.514
Rank 1 · TkA05G432100 · TK1151
Nucleus0.258
Rank 2 · TkA05G432100 · TK1151
Golgi apparatus0.199
Rank 3 · TkA05G432100 · TK1151
Cell membrane0.132
Rank 4 · TkA05G432100 · TK1151
Lysosome / Vacuole0.131
Rank 5 · TkA05G432100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01602Adaptin_N41-642 aa
PF13646HEAT_251-75 aa
PF02985HEAT113-135 aa
PF13646HEAT_2120-206 aa
PF12717Cnd1125-268 aa
PF13513HEAT_EZ128-169 aa
PF02985HEAT149-172 aa
PF13513HEAT_EZ160-210 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G432100PF01602Adaptin_N416426.7e-86289.7
TkA05G432100PF13646HEAT_251755.9e-0627.2
TkA05G432100PF02985HEAT1131351.6e-0731.6
TkA05G432100PF13646HEAT_21202065.9e-0627.2
TkA05G432100PF12717Cnd11252683.7e-1866.8
TkA05G432100PF13513HEAT_EZ1281690.9410.8
TkA05G432100PF02985HEAT1491721.6e-0731.6
TkA05G432100PF13513HEAT_EZ1602100.9410.8
TkA05G432100PF23271HEAT_GCN11752112.4e-0525.2
TkA05G432100PF02985HEAT1862121.6e-0731.6
TkA05G432100PF23271HEAT_GCN13373662.4e-0525.2
TkA05G432100PF23271HEAT_GCN14284782.4e-0525.2
TkA05G432100PF12717Cnd14334743.7e-1866.8
TkA05G432100PF13646HEAT_24574895.9e-0627.2
TkA05G432100PF02985HEAT4644751.6e-0731.6
TkA05G432100PF13513HEAT_EZ4644910.9410.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M2T1Arabidopsis thalianasp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A53.600%Swiss-ProtHigh

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