TkA05G242560 | RubberDandelionOmics

Gene overview

TkA05G242560

Reference: TK1151 Chr: Chr05 Coordinates: 60421690-60426799 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3255 bp · TkA05G242560|TK1151|cDNA

GAAATCTGAGCCTTTTCTCCCTCTCGCATAAGATTGAATCTCCCCAAGTATTTAGATACAAGTATCGGTTTGTGAAGGCTACTCATAGATCGGCGAGGCCAAATGAGGAATGAAGAGATTGAGAGCTCAGACGACAACGAATTACCACCGTCGCTGCCACGAGCGGGTCGTAAGTACGGCCCAGTCGTTGCACACGACAGTGATCCCGTCGTGCTTGAGATGTCCTCCTTCGATCATGGATCTTCGTCTAATCACTTAAA...

CDS

Download CDS FASTA

2907 bp · TkA05G242560|TK1151|CDS

ATGAGGAATGAAGAGATTGAGAGCTCAGACGACAACGAATTACCACCGTCGCTGCCACGAGCGGGTCGTAAGTACGGCCCAGTCGTTGCACACGACAGTGATCCCGTCGTGCTTGAGATGTCCTCCTTCGATCATGGATCTTCGTCTAATCACTTAAACAAAGTAAAAACAAATACGGGCACAGGTGCAAAAGAAGATTCAGTATCCGATGATCGTGGAGTGAATGGCATTGGCGAACACGGAGAATCCAAATTGGAATT...

Protein

Download Protein FASTA

968 aa · TkA05G242560|TK1151|PROTEIN

MRNEEIESSDDNELPPSLPRAGRKYGPVVAHDSDPVVLEMSSFDHGSSSNHLNKVKTNTGTGAKEDSVSDDRGVNGIGEHGESKLELFGFDSLVNILGLKSMTGEPIPVPSSPRGREDGSNAAQHPLIQSSSAVKSGTMMGVFIPCLQNILGIIYYIRFSWIVGMAGIGGSLAVVALCGLCTFLTAVSLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGSMYVLGAVETFLNAVPKAGLFRETITQIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G242560`
TK1151 ID	TkA05G242560
OH-1004 ID	LXL04_020584
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G242560

Location Chr05:60421690-60426799 (+)

Description Similar to CCC1: Cation-chloride cotransporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30450`	Cation/chloride cotransporter that mediates potassium-chloride and sodium-chloride cotransports.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0323700`	Probable cation/chloride cotransporter that may mediate potassium-chloride cotransport.	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1.2011 · DOI: 10.1007/s11103-011-9744-6
`Os01g0304100`	Probable cation/chloride cotransporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020584 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006811 monoatomic ion transport Biological Process

GO:0006821 chloride transport Biological Process

GO:0006884 cell volume homeostasis Biological Process

GO:0055064 chloride ion homeostasis Biological Process

GO:0055075 potassium ion homeostasis Biological Process

GO:0071333 cellular response to glucose stimulus Biological Process

GO:0071476 cellular hypotonic response Biological Process

GO:0071477 cellular hypotonic salinity response Biological Process

GO:0071805 potassium ion transmembrane transport Biological Process

GO:1902476 chloride transmembrane transport Biological Process

GO:1990573 potassium ion import across plasma membrane Biological Process

GO:0005768 endosome Cellular Component

KEGG gene cross-reference

ath:AT1G30450

dosa:Os01g0304100

dosa:Os08g0323700

mmu:107723

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.551

Rank 1 · TkA05G242560 · TK1151

Cytoplasm0.185

Rank 2 · TkA05G242560 · TK1151

Lysosome / Vacuole0.162

Rank 3 · TkA05G242560 · TK1151

Endoplasmic reticulum0.137

Rank 4 · TkA05G242560 · TK1151

Golgi apparatus0.104

Rank 5 · TkA05G242560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00324AA_permease141-611 aa

PF13520AA_permease_2164-590 aa

PF03522SLC12651-772 aa

PF03522SLC12783-967 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G242560	`PF00324`	AA_permease	141	611	7.2e-53	180.6
TkA05G242560	`PF13520`	AA_permease_2	164	590	1.8e-17	64.1
TkA05G242560	`PF03522`	SLC12	651	772	1.5e-38	133.7
TkA05G242560	`PF03522`	SLC12	783	967	1.5e-38	133.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q2UVJ5`	Arabidopsis thaliana	sp\|Q2UVJ5\|CCC1_ARATH Cation-chloride cotransporter 1	78.800%	Swiss-Prot	High
`Q6Z0E2`	Oryza sativa subsp. japonica	sp\|Q6Z0E2\|CCC1_ORYSJ Cation-chloride cotransporter 1	74.700%	Swiss-Prot	High
`Q657W3`	Oryza sativa subsp. japonica	sp\|Q657W3\|CCC2_ORYSJ Cation-chloride cotransporter 2	72.200%	Swiss-Prot	High

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