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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G064590
Reference: TK1151 Chr: Chr05 Coordinates: 17236679-17240149 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3299 bp · TkA05G064590|TK1151|cDNA

GCATATCATAATATTTTTTGGACTTTTTTTCTTCTTGTTTCGTTCATGTGAAATGGCATAAGGTCCTAGGACCTACTTAGGTCCTTAAGGTGTATGTAACTTCGTCCCTGACACCAGTCGGCATCTTGAACTGCCTCACCGGCAACGACGCATCACATGTATCAGATCGAAACCGGTCAGGGGCAATAGTCGGATCAGAAACGGGCAATTCTGGGAACGGGGATTCGATGGTGGTCATTTGAAGGCTAAAAATGACGACG...

CDS

Download CDS FASTA

2514 bp · TkA05G064590|TK1151|CDS

ATGAGAGAGTTAAGCAAAGCTCTCATCAACAACACCAACAATCCTGAATTAGCTTGGCAGATCTTCAAACGCATCGCCTCCAATCCCAGCTTCCCGCCTCATGCTTTCAACGAATCACTATCTGTTCTTACCCGTATCCTTATTGGTGCTAAAAAGTTCACCCAAATCAATGCCCTTCAGCAACTCCTCCTTTCGTACCCATCCAAGACTTCACACGACTCCATGGTCTTGCTCGTCCGAGATCTTGCCAAATCAGGTCA...

Protein

Download Protein FASTA

837 aa · TkA05G064590|TK1151|PROTEIN

MRELSKALINNTNNPELAWQIFKRIASNPSFPPHAFNESLSVLTRILIGAKKFTQINALQQLLLSYPSKTSHDSMVLLVRDLAKSGHVSLAISQLQAIRAHDPNKPLSISLYNLLIRSSLQKNLPSCVRMLYEDMIVSRVPPETYTFNLLIEGLCDSGCLDDARKVFDKMPERECIPNEFTFGILVRGYCRAGRTSQGLELLKVMRSMNLLPNLVIYNTLVSAFCKEGKTNEAEMLVDMIREDGLVPNIVTFNSRISALC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G064590
TK1151 IDTkA05G064590
OH-1004 IDLXL04_019576
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 99.164 / OH-1004 91.209
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G064590
LocationChr05:17236679-17240149 (+)
DescriptionSimilar to At2g17140: Pentatricopeptide repeat-containing protein At2g17140
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17140 Pentatricopeptide repeat-containing protein At2g17140. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019576 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G09900
ath:AT2G17140
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.816
Rank 1 · TkA05G064590 · TK1151
Plastid0.087
Rank 2 · TkA05G064590 · TK1151
Nucleus0.061
Rank 3 · TkA05G064590 · TK1151
Cytoplasm0.033
Rank 4 · TkA05G064590 · TK1151
Cell membrane0.012
Rank 5 · TkA05G064590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25245TPR_At1g689805-40 aa
PF13812PPR_311-25 aa
PF13041PPR_212-23 aa
PF01535PPR13-25 aa
PF29070MSC6_N82-201 aa
PF23276TPR_2487-121 aa
PF13041PPR_2109-156 aa
PF01535PPR111-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G064590PF25245TPR_At1g689805400.2312.2
TkA05G064590PF13812PPR_311257.6e-60199.6
TkA05G064590PF13041PPR_212236.4e-151491.1
TkA05G064590PF01535PPR13259.4e-108345.9
TkA05G064590PF29070MSC6_N822013.6e-2899.5
TkA05G064590PF23276TPR_24871215.2e-38130.7
TkA05G064590PF13041PPR_21091566.4e-151491.1
TkA05G064590PF01535PPR1111389.4e-108345.9
TkA05G064590PF24760TPR_IF140_C1181700.0001323.1
TkA05G064590PF23279TPR_251281720.1512.8
TkA05G064590PF17177PPR_long1312357.9e-30104.5
TkA05G064590PF08579RPM21311560.2212.6
TkA05G064590PF13812PPR_31331867.6e-60199.6
TkA05G064590PF28722WHD_Sfc3_5th1331610.001419.5
TkA05G064590PF29978ATP18_TPR1341580.000720.2
TkA05G064590PF12854PPR_11401701.5e-136444.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WPZ6Arabidopsis thalianasp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g1714039.000%Swiss-ProtLow

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