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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G194880
Reference: TK1151 Chr: Chr04 Coordinates: 50225158-50227331 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1751 bp · TkA04G194880|TK1151|cDNA

CTTGCACTACTCTCTTCTACTCTCTGTTATCGAGTGATTGCTTTAAACTAGGGTTTTGATCGATTACTCCCCACAAAGACTTAAGAATTCATCATGGGTAAGGAAAAGACTCACGTGAACATTGTCGTGATCGGGCATGTGGACTCCGGCAAGTCGACGACCACCGGACATCTGATATACAAGCTTGGAGGAATCGACAAGCGTGTGATTGAGAAATTCGAGAAAGAAGCTGCAGAGATGAACAAGCGGTCATTCAAGTA...

CDS

Download CDS FASTA

1092 bp · TkA04G194880|TK1151|CDS

ATGGGTAAGGAAAAGACTCACGTGAACATTGTCGTGATCGGGCATGTGGACTCCGGCAAGTCGACGACCACCGGACATCTGATATACAAGCTTGGAGGAATCGACAAGCGTGTGATTGAGAAATTCGAGAAAGAAGCTGCAGAGATGAACAAGCGGTCATTCAAGTACGCATGGGTGCTCGACAAACTCAAGGCGGAGCGTGAGCGTGGAATCACAATCGACATTGCTTTGTGGAAGTTTGAAACCACAAAGTATTACTG...

Protein

Download Protein FASTA

363 aa · TkA04G194880|TK1151|PROTEIN

MGKEKTHVNIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIEKFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSNNLDWYKGPTLLDALDAINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G194880
TK1151 IDTkA04G194880
OH-1004 IDLXL04_034962
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.900
Protein coverage (%)TK1151 99.725 / OH-1004 80.624
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G194880
LocationChr04:50225158-50227331 (-)
DescriptionSimilar to REFA1: Elongation factor 1-alpha
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07940 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: O64937 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034962 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006412 translation Biological Process
GO:0006414 translational elongation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G07920
ath:AT1G07930
ath:AT1G07940
ath:AT5G60390
osa:4331811
osa:4331812
osa:4331813
sly:101244084
sly:544055
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.731
Rank 1 · TkA04G194880 · TK1151
Nucleus0.197
Rank 2 · TkA04G194880 · TK1151
Cell membrane0.139
Rank 3 · TkA04G194880 · TK1151
Mitochondrion0.099
Rank 4 · TkA04G194880 · TK1151
Endoplasmic reticulum0.060
Rank 5 · TkA04G194880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00009GTP_EFTU5-222 aa
PF14578GTP_EFTU_D48-28 aa
PF13401AAA_229-117 aa
PF03144GTP_EFTU_D210-23 aa
PF00350Dynamin_N10-23 aa
PF23769Beta-prop_WDR75_2nd27-134 aa
PF28277FcpA37-101 aa
PF00350Dynamin_N42-97 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G194880PF00009GTP_EFTU52223.3e-59200.4
TkA04G194880PF14578GTP_EFTU_D48280.04514.4
TkA04G194880PF13401AAA_2291170.06114.4
TkA04G194880PF03144GTP_EFTU_D210232.6e-1557.3
TkA04G194880PF00350Dynamin_N10230.1912.5
TkA04G194880PF23769Beta-prop_WDR75_2nd271340.310.6
TkA04G194880PF28277FcpA371010.0413.6
TkA04G194880PF00350Dynamin_N42970.1912.5
TkA04G194880PF02662FlpD47690.08113.7
TkA04G194880PF01926MMR_HSR1611250.001819.1
TkA04G194880PF09439SRPRB831750.08413.0
TkA04G194880PF02662FlpD1362060.08113.7
TkA04G194880PF03144GTP_EFTU_D22483132.6e-1557.3
TkA04G194880PF14578GTP_EFTU_D42523020.04514.4
TkA04G194880PF03143GTP_EFTU_D32833017.6e-0730.1
TkA04G194880PF03143GTP_EFTU_D33223607.6e-0730.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0DH99Arabidopsis thalianasp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 195.800%Swiss-ProtHigh
O64937Oryza sativa subsp. japonicasp|O64937|EF1A_ORYSJ Elongation factor 1-alpha95.900%Swiss-ProtHigh

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