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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G121800
Reference: TK1151 Chr: Chr04 Coordinates: 31663897-31667120 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1772 bp · TkA04G121800|TK1151|cDNA

CGGAGTCACGGTCTTGTATAAACCCCGTTTAGCTATGCGGTAAAGCTCCGATTCCCGAATAGTTTCGGATCTCCGACAGAGAGAGAGAGAGAGCGACACAGCAATGCATCACTGGGTTCGAGCTTCACCGTCCGATTTTGGTGGACCTCTTCCTACTCCTCGGAGTGGCCACACCGCAGTCAATGTTGGAAAGTCAAAGATCATAGTGTTTGGTGGTCTTGTGGATAAGAATTTCCTCGATGACATCTCTGTATACGACA...

CDS

Download CDS FASTA

1458 bp · TkA04G121800|TK1151|CDS

ATGCATCACTGGGTTCGAGCTTCACCGTCCGATTTTGGTGGACCTCTTCCTACTCCTCGGAGTGGCCACACCGCAGTCAATGTTGGAAAGTCAAAGATCATAGTGTTTGGTGGTCTTGTGGATAAGAATTTCCTCGATGACATCTCTGTATACGACATCGATAACAAGTTATGGTTTCAGCCTCAGTGCACTGGTAGTGGTTCAGATGGCCAAACAGGTCCCAGTCCTAGAGCATTTCACATTGCCATTGCAATCGACTG...

Protein

Download Protein FASTA

485 aa · TkA04G121800|TK1151|PROTEIN

MHHWVRASPSDFGGPLPTPRSGHTAVNVGKSKIIVFGGLVDKNFLDDISVYDIDNKLWFQPQCTGSGSDGQTGPSPRAFHIAIAIDCHMFVFGGRLGTKRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNHKIVMYGGWDGKKWLSDVFVLDTMSLEWRELAVSGTLPPPRCGHTATMVEKRLLVYGGRGGGGPIMGDLWALKGLIEEDNEAPGWTHLKLPGQVPAARCGHTVTSGGHYLLMFGGHGTGGWLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G121800
TK1151 IDTkA04G121800
OH-1004 IDLXL04_035587
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G121800
LocationChr04:31663897-31667120 (-)
DescriptionSimilar to GPA3: Protein GLUTELIN PRECURSOR ACCUMULATION 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0835800 Acts synergistically with RAB5A and VPS9A to regulate dense vesicle-mediated post-Golgi trafficking of major storage proteins in the seed endosperm during grain filling and maturation.
GLUTELIN PRECURSOR ACCUMULATION3 encodes a regulator of post-Golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm.2014 · DOI: 10.1105/tpc.113.121376
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035587 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0007165 signal transduction Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0019046 release from viral latency Biological Process
GO:0043254 regulation of protein-containing complex assembly Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0045931 positive regulation of mitotic cell cycle Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0050821 protein stabilization Biological Process
KEGG gene cross-reference
dosa:Os03g0835800
maua:101830931
osa:4334700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.538
Rank 1 · TkA04G121800 · TK1151
Nucleus0.316
Rank 2 · TkA04G121800 · TK1151
Golgi apparatus0.130
Rank 3 · TkA04G121800 · TK1151
Cell membrane0.114
Rank 4 · TkA04G121800 · TK1151
Lysosome / Vacuole0.095
Rank 5 · TkA04G121800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13415Beta-prop_FBX423-160 aa
PF13854Kelch_HCF11-66 aa
PF03089RAG211-147 aa
PF24681Kelch_KLHDC2_KLHL20_DRC712-195 aa
PF24981Beta-prop_ATRN-LZTR115-60 aa
PF13418Beta-prop_TYW415-58 aa
PF13964Beta-prop_Calicin17-175 aa
PF07646Kelch_219-59 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G121800PF13415Beta-prop_FBX4231601.8e-60204.8
TkA04G121800PF13854Kelch_HCF11661.1e-32114.4
TkA04G121800PF03089RAG2111470.003617.1
TkA04G121800PF24681Kelch_KLHDC2_KLHL20_DRC7121956e-77258.6
TkA04G121800PF24981Beta-prop_ATRN-LZTR115601.7e-34120.1
TkA04G121800PF13418Beta-prop_TYW415583.2e-2073.8
TkA04G121800PF13964Beta-prop_Calicin171750.002317.7
TkA04G121800PF07646Kelch_219596.3e-2792.8
TkA04G121800PF01344Kelch_120586.6e-2999.8
TkA04G121800PF24996NANM20607.6e-0625.7
TkA04G121800PF25210Kelch_FKB9523589.1e-0729.5
TkA04G121800PF24981Beta-prop_ATRN-LZTR1713131.7e-34120.1
TkA04G121800PF13854Kelch_HCF731461.1e-32114.4
TkA04G121800PF13418Beta-prop_TYW4741623.2e-2073.8
TkA04G121800PF01344Kelch_1761206.6e-2999.8
TkA04G121800PF25210Kelch_FKB95761749.1e-0729.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q10AZ7Oryza sativa subsp. japonicasp|Q10AZ7|GPA3_ORYSJ Protein GLUTELIN PRECURSOR ACCUMULATION 365.800%Swiss-ProtHigh

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